Factsheet for TraesCS4A01G434000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G390300.1
TraesCS4A01G428700.1
TraesCS7A01G061100.1
TraesCS7A01G090400.1
TraesCS7D01G055900.1
TraesCS7D01G086400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	TraesCS4A01G428700.1	AT4G10800.1	21798944
AT5G51100.1	TraesCS7A01G061100.1	AT4G10800.1	21798944
AT5G51100.1	TraesCS7D01G055900.1	AT4G10800.1	21798944
AT5G51100.1	TraesCS4A01G390300.1	AT5G23310.1	18996978
AT5G51100.1	TraesCS7A01G090400.1	AT5G23310.1	18996978
AT5G51100.1	TraesCS7D01G086400.1	AT5G23310.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G048600.1	Wheat	mitochondrion	80.82	80.41
HORVU7Hr1G008390.6	Barley	plastid	83.38	79.13
Zm00001d045538_P001	Maize	plastid	60.87	61.66
KXG19156	Sorghum	plastid	60.36	60.2
Os06t0115400-01	Rice	plastid	58.82	58.82
Bra013863.1-P	Field mustard	cytosol	26.34	48.58
CDY03380	Canola	cytosol	25.83	48.56
CDY34342	Canola	cytosol	26.34	48.36
CDY11055	Canola	cytosol	25.83	46.76
Solyc06g048410.2.1	Tomato	plastid	29.67	46.59
AT4G25100.2	Thale cress	plastid	25.06	46.23
PGSC0003DMT400070920	Potato	extracellular, plastid	29.67	46.03
CDX92676	Canola	cytosol	25.32	45.83
KRH34597	Soybean	cytosol, nucleus	28.13	45.08
Solyc06g048420.1.1	Tomato	cytosol	18.41	45.0
GSMUA_Achr11P...	Banana	plastid	34.53	44.85
Solyc03g095180.2.1	Tomato	plastid	34.53	44.55
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	34.27	44.22
KRG92190	Soybean	cytosol	27.62	43.55
Bra029190.1-P	Field mustard	mitochondrion	29.92	43.33
CDY38848	Canola	plastid	31.2	40.8
AT5G51100.1	Thale cress	plastid	31.2	40.0
CDY32644	Canola	plastid	30.69	40.0
KRH33343	Soybean	plastid	30.95	39.03
VIT_16s0013g00260.t01	Wine grape	plastid	30.43	38.89
KRH70390	Soybean	plastid	30.18	37.58
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	24.3	36.4
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	23.79	35.77
CDY05836	Canola	cytosol	19.44	35.19
TraesCS2A01G537100.1	Wheat	mitochondrion	18.41	31.17
Bra035724.1-P	Field mustard	cytosol	17.14	30.32
CDY70727	Canola	mitochondrion	12.02	16.85

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	Gene3D:2.40.500.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784
GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS
InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PRINTS:PR01703
ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF3	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719
EnsemblPlantsGene:TraesCS4A01G434000	EnsemblPlants:TraesCS4A01G434000.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4A:-:704795701..704797806

Molecular Weight (calculated)

42921.7 Da

IEP (calculated)

9.823

GRAVY (calculated)

-0.526

Length

391 amino acids

Sequence
(BLAST)

001: MAFAAPVGVG GGPLSLALPA SSSAPFLLRA GGDSPQRGRL RRLAAPRRGG ARGDSRGRWN CHVTRCAGEA NVVTEDDTAN VAADAAADQA ANASGDAADV
101: SLNPDDVDSV AWIKQQPLPY PADALEPYIS KETVEQHWGV HQRGHVDRLN GMIGGSEWER MSIGQMMLAS FNEGREPPHA PFFHAAQVWN HDFYWRSIKP
201: GGGGKPPERL LKFINRDFGS YDGMIKQFMD VALTQFGSGW VWLSYKGSKL PHVKSKSPIP SDNYGRLVIS KSPNAINPLV WGHSPLLAID VWEHAYYLDY
301: ENRRAEYVSA VLEKLVSWEM VESRLRKAVL RAIERDGHTS PKQRRKQLLS QAKSRVGDAS TSGEARRRPR SKDQQAPSSV RMVPAGEAVP N

Best Arabidopsis Sequence Match ( AT5G51100.1 )
(BLAST)

001: MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA
101: LSLEEVVLLS YNKGNMLPAF NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW LAYKANRLDV ANAVNPLPKE
201: EDKKLVIVKT PNAVNPLVWD YSPLLTIDTW EHAYYLDFEN RRAEYINTFM EKLVSWETVS TRLESAIARA VQREQEGTET EDEENPDDEV PEVYLDSDID
301: VSEVD

Arabidopsis Description

FSD2Superoxide dismutase [Fe] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.