Factsheet for TraesCS7A01G090400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G374300.1
TraesCS4A01G390300.1
TraesCS4A01G434000.1
TraesCS7A01G048600.1
TraesCS7A01G090400.1
TraesCS7D01G043000.1
TraesCS7D01G086400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	TraesCS3A01G374300.1	AT3G54290.1	21798944
AT5G23310.1	TraesCS4A01G390300.1	AT5G23310.1	18996978
AT5G23310.1	TraesCS7A01G090400.1	AT5G23310.1	18996978
AT5G23310.1	TraesCS7D01G086400.1	AT5G23310.1	18996978
AT5G23310.1	TraesCS4A01G434000.1	AT5G51100.1	18996978
AT5G23310.1	TraesCS7A01G048600.1	AT5G51100.1	18996978
AT5G23310.1	TraesCS7D01G043000.1	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	96.54	96.54
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	95.0	94.64
KXG19271	Sorghum	plastid	78.08	77.78
Os06t0143000-01	Rice	plastid	75.0	76.47
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	52.69	73.66
Zm00001d045384_P003	Maize	mitochondrion	56.92	73.63
GSMUA_Achr10P...	Banana	vacuole	60.77	70.22
HORVU7Hr1G020590.12	Barley	cytosol, plastid	90.38	69.32
Zm00001d014632_P001	Maize	mitochondrion	40.77	68.83
GSMUA_Achr10P...	Banana	mitochondrion	61.54	67.23
Zm00001d036135_P003	Maize	mitochondrion, plastid	71.92	65.85
CDY16845	Canola	plastid	60.0	59.32
Bra026503.1-P	Field mustard	plastid	60.0	59.32
AT5G23310.1	Thale cress	plastid	59.62	58.94
CDY45763	Canola	plastid	59.62	58.94
CDX87176	Canola	plastid	58.85	58.85
CDX88013	Canola	plastid	59.62	58.71
Bra009670.1-P	Field mustard	plastid	59.23	58.56
Solyc02g021140.2.1	Tomato	nucleus	54.62	56.35
PGSC0003DMT400046236	Potato	plastid	53.46	53.88
KRG89844	Soybean	nucleus	58.46	49.84
VIT_10s0042g00100.t01	Wine grape	mitochondrion	57.69	46.73
TraesCS2A01G537100.1	Wheat	mitochondrion	26.92	30.3
TraesCS4A01G434000.1	Wheat	plastid	35.77	23.79
TraesCS7A01G048600.1	Wheat	mitochondrion	35.77	23.66

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.4	Gene3D:2.40.500.20	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD
InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777
PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF7	InterPro:SOD_C_sf
SUPFAM:SSF46609	SUPFAM:SSF54719	EnsemblPlantsGene:TraesCS7A01G090400	EnsemblPlants:TraesCS7A01G090400.1	SEG:seg	:

Description

No Description!

Coordinates

chr7A:-:54999944..55001350

Molecular Weight (calculated)

29799.6 Da

IEP (calculated)

7.459

GRAVY (calculated)

-0.427

Length

260 amino acids

Sequence
(BLAST)

001: MLLPMRGLPA APPRPLAHPH TAPAPPPSLL GPRRRRPSRR LSKVVSYYGL TTPPYKTDAL EPYMSRRAVE LHWGKHQQDY VDGLNKQLAI SPLYGHTLED
101: LIKEAYNNGN PLPEYNDAAE VWNHHFFWES MQPEGGGSPE AGVLQQIEKD FGSFFNFREE FMRSALSLLG SGWVWLVLKR SERKLEVVHT RNAINPLAFG
201: DIPIISLDLW EHAYYLDYKD DRRTYVSNFL DHLVSWHTVT LRMMRAEAFV NLGEPTIPVA

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.