Factsheet for Bra009670.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra007062.1-P
Bra009670.1-P
Bra014824.1-P
Bra026503.1-P
Bra028465.1-P
Bra029190.1-P
Bra035724.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	Bra007062.1-P	AT3G54290.1	21798944
AT5G23310.1	Bra014824.1-P	AT3G54290.1	21798944
AT5G23310.1	Bra009670.1-P	AT5G23310.1	18996978
AT5G23310.1	Bra026503.1-P	AT5G23310.1	18996978
AT5G23310.1	Bra028465.1-P	AT5G40590.1	21798944
AT5G23310.1	Bra029190.1-P	AT5G51100.1	18996978
AT5G23310.1	Bra035724.1-P	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88013	Canola	plastid	98.48	98.11
Bra026503.1-P	Field mustard	plastid	94.68	94.68
AT5G23310.1	Thale cress	plastid	93.54	93.54
GSMUA_Achr10P...	Banana	vacuole	59.7	69.78
GSMUA_Achr10P...	Banana	mitochondrion	60.46	66.81
Solyc02g021140.2.1	Tomato	nucleus	63.5	66.27
PGSC0003DMT400046236	Potato	plastid	61.98	63.18
Os06t0143000-01	Rice	plastid	58.56	60.39
Zm00001d045384_P003	Maize	mitochondrion	46.01	60.2
KXG19271	Sorghum	plastid	59.7	60.15
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	58.56	59.23
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	58.56	59.23
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	58.56	59.0
VIT_10s0042g00100.t01	Wine grape	mitochondrion	69.58	57.01
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	40.3	56.99
KRG89844	Soybean	nucleus	65.02	56.07
Bra013863.1-P	Field mustard	cytosol	44.49	55.19
Zm00001d014632_P001	Maize	mitochondrion	31.18	53.25
Zm00001d036135_P003	Maize	mitochondrion, plastid	56.65	52.46
HORVU7Hr1G020590.12	Barley	cytosol, plastid	59.32	46.02
Bra029190.1-P	Field mustard	mitochondrion	44.87	43.7
Bra007239.1-P	Field mustard	cytosol	26.62	30.84
Bra034154.1-P	Field mustard	mitochondrion	25.1	28.57
Bra029879.1-P	Field mustard	mitochondrion	24.71	28.14
Bra035724.1-P	Field mustard	cytosol	18.25	21.72

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.4	Gene3D:2.40.500.20	EnsemblPlantsGene:Bra009670	EnsemblPlants:Bra009670.1
EnsemblPlants:Bra009670.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019430	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	UniProt:M4CZM3	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS
InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349
PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR42769	PANTHER:PTHR42769:SF7	InterPro:SOD_C_sf	SUPFAM:SSF46609
SUPFAM:SSF54719	UniParc:UPI000253F086	SEG:seg	:	:	:

Description

AT5G23310 (E=1e-137) FSD3 | FSD3 (FE SUPEROXIDE DISMUTASE 3); superoxide dismutase

Coordinates

chrA06:+:16463035..16464579

Molecular Weight (calculated)

30141.7 Da

IEP (calculated)

8.193

GRAVY (calculated)

-0.506

Length

263 amino acids

Sequence
(BLAST)

001: MASCVVTTSS FCTVSDSSIR LKSSKLVHLS NQQRRRSLGS RGGLKVEAYY GLKTPPYPLD ALEPYMSQRT LEVHWGKHHR GYVDNLNKQL GKDDKLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD MPQKGVLEQI EKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIISL DVWEHSYYID YKNERGKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.