Factsheet for Bra013863.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34342	Canola	cytosol	100.0	99.53
CDY03380	Canola	cytosol	97.17	99.04
AT4G25100.2	Thale cress	plastid	93.4	93.4
Solyc06g048420.1.1	Tomato	cytosol	49.06	65.0
KRH34597	Soybean	cytosol, nucleus	73.11	63.52
KRG92190	Soybean	cytosol	74.06	63.31
Solyc06g048410.2.1	Tomato	plastid	73.11	62.25
PGSC0003DMT400070920	Potato	extracellular, plastid	71.7	60.32
Solyc03g095180.2.1	Tomato	plastid	72.17	50.49
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	72.17	50.49
Bra029190.1-P	Field mustard	mitochondrion	63.68	50.0
VIT_16s0013g00260.t01	Wine grape	plastid	69.34	48.04
KRH70390	Soybean	plastid	70.28	47.45
KRH33343	Soybean	plastid	67.92	46.45
Bra026503.1-P	Field mustard	plastid	55.19	44.49
Bra009670.1-P	Field mustard	plastid	55.19	44.49
GSMUA_Achr11P...	Banana	plastid	56.13	39.53
Bra029879.1-P	Field mustard	mitochondrion	31.6	29.0
Bra034154.1-P	Field mustard	mitochondrion	31.13	28.57
Bra007239.1-P	Field mustard	cytosol	30.19	28.19
Bra035724.1-P	Field mustard	cytosol	29.25	28.05
KXG19156	Sorghum	plastid	50.94	27.55
Os06t0115400-01	Rice	plastid	50.0	27.11
TraesCS7D01G043000.1	Wheat	plastid	49.53	26.79
TraesCS4A01G434000.1	Wheat	plastid	48.58	26.34
TraesCS7A01G048600.1	Wheat	mitochondrion	48.58	26.21
HORVU7Hr1G008390.6	Barley	plastid	49.06	25.24

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	Gene3D:2.40.500.20	EnsemblPlantsGene:Bra013863	EnsemblPlants:Bra013863.1	EnsemblPlants:Bra013863.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005886
GO:GO:0006801	GO:GO:0006950	GO:GO:0006979	GO:GO:0007623	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009628	GO:GO:0009642
GO:GO:0009941	GO:GO:0009987	GO:GO:0010193	GO:GO:0016020	GO:GO:0016491	GO:GO:0019430
GO:GO:0019904	GO:GO:0046686	GO:GO:0046688	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314
InterPro:IPR036324	UniProt:M4DBK3	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N
InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088
PANTHER:PTHR42769	PANTHER:PTHR42769:SF8	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI0002546833
SEG:seg	:	:	:	:	:

Description

AT4G25100 (E=1e-096) FSD1 | FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutase

Coordinates

chrA01:-:8124225..8125900

Molecular Weight (calculated)

23849.1 Da

IEP (calculated)

6.398

GRAVY (calculated)

-0.370

Length

212 amino acids

Sequence
(BLAST)

001: MAASAAVTAN YVLKPPPYPL DALEPHMSKQ TLEFHWGKHH RAYVDNLKKQ VLGSELEGKP LEHIIQNTYN NGDLLPPFNN AAQAWNHEFF WESMKPGGGG
101: KPSGELLALL ERDFTSYEKF YDEFNAAAAT QFGAGWAWLA YADNKLKVVK TPNAVNPLVL GSFPLLTIDV WEHAYYLDFQ NRRPDYIKTF MNNLVSWEAV
201: SSRLEAAKAA SS

Best Arabidopsis Sequence Match ( AT4G25100.2 )
(BLAST)

001: MAASSAVTAN YVLKPPPFAL DALEPHMSKQ TLEFHWGKHH RAYVDNLKKQ VLGTELEGKP LEHIIHSTYN NGDLLPAFNN AAQAWNHEFF WESMKPGGGG
101: KPSGELLALL ERDFTSYEKF YEEFNAAAAT QFGAGWAWLA YSNEKLKVVK TPNAVNPLVL GSFPLLTIDV WEHAYYLDFQ NRRPDYIKTF MTNLVSWEAV
201: SARLEAAKAA SA

Arabidopsis Description

FSD1Superoxide dismutase [Fe] 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P21276]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.