Factsheet for Solyc06g048410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
extracellular: 22892874
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005670.2.1
Solyc02g021140.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc05g007420.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	Solyc05g007420.1.1	AT1G69690.1	21798944
AT5G51100.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT5G51100.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT5G51100.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT5G51100.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT5G51100.1	Solyc01g005670.2.1	AT4G10800.1	21798944
AT5G51100.1	Solyc02g021140.2.1	AT5G23310.1	18996978
AT5G51100.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT5G51100.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT5G51100.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT5G51100.1	Solyc06g072990.1.1	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070920	Potato	extracellular, plastid	93.98	92.86
Solyc06g048420.1.1	Tomato	cytosol	54.22	84.38
AT4G25100.2	Thale cress	plastid	62.25	73.11
Bra013863.1-P	Field mustard	cytosol	62.25	73.11
CDY34342	Canola	cytosol	62.25	72.77
CDY03380	Canola	cytosol	60.64	72.6
CDY11055	Canola	cytosol	62.25	71.76
CDX92676	Canola	cytosol	61.04	70.37
Solyc03g095180.2.1	Tomato	plastid	78.71	64.69
KRH34597	Soybean	cytosol, nucleus	63.05	64.34
KRG92190	Soybean	cytosol	61.85	62.1
VIT_16s0013g00260.t01	Wine grape	plastid	71.08	57.84
Bra029190.1-P	Field mustard	mitochondrion	58.23	53.7
KRH33343	Soybean	plastid	64.66	51.94
KRH70390	Soybean	plastid	63.45	50.32
AT5G51100.1	Thale cress	plastid	61.45	50.16
CDY32644	Canola	plastid	59.84	49.67
CDY38848	Canola	plastid	59.44	49.5
Solyc02g021140.2.1	Tomato	nucleus	45.78	45.24
GSMUA_Achr11P...	Banana	plastid	53.41	44.19
CDY05836	Canola	cytosol	30.92	35.65
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	32.13	35.09
Bra035724.1-P	Field mustard	cytosol	26.91	30.32
TraesCS7D01G043000.1	Wheat	plastid	47.39	30.1
Zm00001d045538_P001	Maize	plastid	46.59	30.05
TraesCS4A01G434000.1	Wheat	plastid	46.59	29.67
Os06t0115400-01	Rice	plastid	46.18	29.41
TraesCS7A01G048600.1	Wheat	mitochondrion	46.18	29.26
HORVU7Hr1G008390.6	Barley	plastid	48.19	29.13
KXG19156	Sorghum	plastid	45.38	28.83
CDY70727	Canola	mitochondrion	23.29	20.79

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	MapMan:15.6.1.2.2.4	MapMan:15.6.1.2.2.9	Gene3D:2.40.500.20	EMBL:AJ579656
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009536	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N
InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088
PANTHER:PTHR42769	PANTHER:PTHR42769:SF8	UniProt:Q7YK44	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719
EnsemblPlantsGene:Solyc06g048410.2	EnsemblPlants:Solyc06g048410.2.1	UniParc:UPI00001B5B64	SEG:seg	:	:

Description

Superoxide dismutase [Source:UniProtKB/TrEMBL;Acc:Q7YK44]

Coordinates

chr6:+:31007952..31010386

Molecular Weight (calculated)

27911.9 Da

IEP (calculated)

7.182

GRAVY (calculated)

-0.399

Length

249 amino acids

Sequence
(BLAST)

001: MAATASANSL TSAFLPPQGF NGSSKSLQWR TQKKQFGRKA GSATITAKFD LIPPPYPMDA LEPHMSSRTF EFHWGKHHRA YVDNLNKQID GTELDGKTLE
101: DIILVTYNNG APLPAFNNAA QAWNHQFFWE SMKPNGGGEP SGELLELINR DFGSYDTFVK EFKAAAATQF GSGWAWLAYK PEDKKLALVK TPNAENPLVL
201: GYTPLLTIDV WEHAYYLDFQ NRRPDYISIF MEKLVSWEAV SIRLKAASA

Best Arabidopsis Sequence Match ( AT5G51100.1 )
(BLAST)

001: MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA
101: LSLEEVVLLS YNKGNMLPAF NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW LAYKANRLDV ANAVNPLPKE
201: EDKKLVIVKT PNAVNPLVWD YSPLLTIDTW EHAYYLDFEN RRAEYINTFM EKLVSWETVS TRLESAIARA VQREQEGTET EDEENPDDEV PEVYLDSDID
301: VSEVD

Arabidopsis Description

FSD2Superoxide dismutase [Fe] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.