Factsheet for Os06t0115400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os06t0129200-01
Os06t0143000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51100.1	Os06t0129200-01	AT4G10800.1	21798944
AT5G51100.1	Os06t0143000-01	AT5G23310.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19156	Sorghum	plastid	60.1	59.95
Zm00001d045538_P001	Maize	plastid	58.82	59.59
TraesCS4A01G434000.1	Wheat	plastid	58.82	58.82
TraesCS7A01G048600.1	Wheat	mitochondrion	58.57	58.27
TraesCS7D01G043000.1	Wheat	plastid	57.54	57.4
HORVU7Hr1G008390.6	Barley	plastid	58.82	55.83
Bra013863.1-P	Field mustard	cytosol	27.11	50.0
CDY03380	Canola	cytosol	26.6	50.0
CDY34342	Canola	cytosol	27.11	49.77
CDX92676	Canola	cytosol	26.6	48.15
AT4G25100.2	Thale cress	plastid	26.09	48.11
CDY11055	Canola	cytosol	26.34	47.69
Solyc06g048420.1.1	Tomato	cytosol	19.18	46.88
KRH34597	Soybean	cytosol, nucleus	29.16	46.72
Solyc06g048410.2.1	Tomato	plastid	29.41	46.18
PGSC0003DMT400070920	Potato	extracellular, plastid	29.67	46.03
Bra029190.1-P	Field mustard	mitochondrion	31.71	45.93
KRG92190	Soybean	cytosol	28.9	45.56
GSMUA_Achr11P...	Banana	plastid	34.02	44.19
Solyc03g095180.2.1	Tomato	plastid	33.76	43.56
PGSC0003DMT400013447	Potato	cytosol, extracellular, plastid	33.76	43.56
CDY38848	Canola	plastid	31.46	41.14
CDY32644	Canola	plastid	31.46	41.0
AT5G51100.1	Thale cress	plastid	31.71	40.66
VIT_16s0013g00260.t01	Wine grape	plastid	31.71	40.52
KRH33343	Soybean	plastid	30.95	39.03
Os06t0143000-01	Rice	plastid	25.32	38.82
KRH70390	Soybean	plastid	30.69	38.22
CDY05836	Canola	cytosol	20.2	36.57
Bra035724.1-P	Field mustard	cytosol	18.16	32.13
Os05t0323900-01	Rice	mitochondrion	16.88	28.57
CDY70727	Canola	mitochondrion	12.53	17.56

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	Gene3D:2.40.500.20	EntrezGene:4339922	EMBL:AK111656	ProteinID:BAD67766.1
ProteinID:BAD67906.1	ProteinID:BAF18526.1	ProteinID:BAS95837.1	ProteinID:EEE64982.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314
InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf
EnsemblPlantsGene:Os06g0115400	EnsemblPlants:Os06t0115400-01	PFAM:PF00081	PFAM:PF02777	PRINTS:PR01703	ScanProsite:PS00088
PANTHER:PTHR42769	PANTHER:PTHR42769:SF3	UniProt:Q5VRL3	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719
UniParc:UPI0000457C87	RefSeq:XP_015641241.1	SEG:seg	:	:	:

Description

Similar to Superoxide dismutase [Fe], chloroplast (EC 1.15.1.1) (Fragment). (Os06t0115400-01);Similar to Superoxide dismutase. (Os06t0115400-02)

Coordinates

chr6:-:864346..866968

Molecular Weight (calculated)

43422.7 Da

IEP (calculated)

5.444

GRAVY (calculated)

-0.539

Length

391 amino acids

Sequence
(BLAST)

001: MAFATLVGVG GLSPALFSPS RPLSCSSSTS VSAPFILRAG GGGDARRHGL RRLVTPLRGS ACRGESTNSR VLQCANEANV VTEDDIVNDG IDDETASDAE
101: MDEDAEANGD ESSGTDEDAS VSWIEQQPLP YPSDALEPYI SKETVEQHWG VHQNIHVERL NGMIGGSEWE GMSLGQMMLS SFNEGREAPH PPFFHAAQIW
201: NHDFYWRSMQ PGGGGKPPER LLKFINRDFG SYDGMIRQFM DAASTQFGSG WVWLCYKTSK LPHVKSRSPI PSDNYGRLVI SKSPNAINPL VWGHSPLLAI
301: DLWEHAYYLD YEDRRSDYVS TFLEKLVSWE TVESRLKKAV QRAVERDEYV STKHIRKQLL ARAKSQIRAM PQQVNGDARE QTSGQEKSLG V

Best Arabidopsis Sequence Match ( AT5G51100.1 )
(BLAST)

001: MMNVAVTATP SSLLYSPLLL PSQGPNRRMQ WKRNGKRRLG TKVAVSGVIT AGFELKPPPY PLDALEPHMS RETLDYHWGK HHKTYVENLN KQILGTDLDA
101: LSLEEVVLLS YNKGNMLPAF NNAAQAWNHE FFWESIQPGG GGKPTGELLR LIERDFGSFE EFLERFKSAA ASNFGSGWTW LAYKANRLDV ANAVNPLPKE
201: EDKKLVIVKT PNAVNPLVWD YSPLLTIDTW EHAYYLDFEN RRAEYINTFM EKLVSWETVS TRLESAIARA VQREQEGTET EDEENPDDEV PEVYLDSDID
301: VSEVD

Arabidopsis Description

FSD2Superoxide dismutase [Fe] 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LU64]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.