Factsheet for Os05t0323900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	mitochondrion
Plant-mPloc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

mitochondrion: 12746528
plasma membrane: 15069638
mitochondrion: 15276442
mitochondrion: 16429260
plastid: 17189339
mitochondrion: 19010998
extracellular: 19038476
mitochondrion: 23027867
plasma membrane: 27800704
plastid: 27992503

msms PMID: 15276442 doi

BK Kristensen, P Askerlund, NV Bykova, H Egsgaard, IM Møller

Risø National Laboratory, Plant Research Department, P.O. Box 49, DK-4000 Roskilde, Denmark.

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 12746528 doi

JL Heazlewood, KA Howell, J Whelan, AH Millar

Plant Molecular Biology Group, School of Biomedical and Chemical Sciences, The University of Western Australia, Crawley 6009, Australia.

msms PMID: 16429260 doi

KA Howell, AH Millar, J Whelan

ARC Centre of Excellence in Plant Energy Biology, CMS Building M310, University of Western Australia, 35 Stirling Hwy, Perth, WA 6009, Australia.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 19038476 doi

XY Chen, ST Kim, WK Cho, Y Rim, S Kim, SW Kim, KY Kang, ZY Park, JY Kim

Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju 660-701, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037859_P002	Maize	mitochondrion	89.18	87.66
EES17972	Sorghum	mitochondrion	87.45	86.7
TraesCS2A01G537100.1	Wheat	mitochondrion	84.85	84.85
TraesCS2D01G538300.1	Wheat	mitochondrion	84.42	84.42
Zm00001d009990_P001	Maize	mitochondrion	87.88	83.54
TraesCS2B01G567600.1	Wheat	mitochondrion	80.95	83.11
CDY36283	Canola	cytosol	60.17	77.22
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	74.89	75.88
PGSC0003DMT400042937	Potato	mitochondrion	74.46	75.44
GSMUA_Achr3P09840_001	Banana	mitochondrion	77.06	73.86
AT3G10920.1	Thale cress	mitochondrion	73.59	73.59
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	80.09	73.12
GSMUA_Achr8P21350_001	Banana	mitochondrion	74.89	72.69
Bra034154.1-P	Field mustard	mitochondrion	72.29	72.29
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	76.62	72.24
KRH64185	Soybean	mitochondrion	74.89	72.08
Bra029879.1-P	Field mustard	mitochondrion	71.43	71.43
CDY08566	Canola	mitochondrion	71.0	71.0
CDY08564	Canola	mitochondrion	71.0	71.0
KRH53764	Soybean	mitochondrion	73.59	70.54
CDY00976	Canola	mitochondrion	70.13	70.13
GSMUA_Achr3P18000_001	Banana	mitochondrion	73.59	69.96
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	66.23	54.06
Os06t0143000-01	Rice	plastid	31.6	28.63
Os06t0115400-01	Rice	plastid	28.57	16.88

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	EntrezGene:4338417	EMBL:AC134346	EMBL:AK104030
EMBL:AK104160	ProteinID:BAA86897.1	ProteinID:BAF17109.1	ProteinID:BAS93374.1	ProteinID:EEE63257.1	GO:GO:0000003
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006801
GO:GO:0006950	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607
GO:GO:0009628	GO:GO:0009651	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009987
GO:GO:0010043	GO:GO:0016491	GO:GO:0019430	GO:GO:0042742	GO:GO:0046872	GO:GO:0055114
EMBL:GQ848046	InterPro:IPR036314	InterPro:IPR036324	EMBL:L19436	EMBL:L34038	InterPro:Mn/Fe_SOD
InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	EnsemblPlantsGene:Os05g0323900	EnsemblPlants:Os05t0323900-01
PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404
PANTHER:PTHR11404:SF6	UniProt:Q43008	InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	SignalP:SignalP-noTM
UniParc:UPI00000A020D	RefSeq:XP_015640127.1	SEG:seg	:	:	:

Description

SUPEROXIDE DISMUTASE A1Manganese superoxide dismutase, Heat-stress tolerance (Os05t0323900-01)

Coordinates

chr5:+:15046751..15051399

Molecular Weight (calculated)

24998.8 Da

IEP (calculated)

7.040

GRAVY (calculated)

-0.129

Length

231 amino acids

Sequence
(BLAST)

001: MALRTLASRK TLAAAALPLA AAAAARGVTT VALPDLPYDY GALEPAISGE IMRLHHQKHH ATYVANYNKA LEQLDAAVAK GDAPAIVHLQ SAIKFNGGGH
101: VNHSIFWNNL KPISEGGGDP PHAKLGWAID EDFGSFEALV KKMSAEGAAL QGSGWVWLAL DKEAKKLSVE TTANQDPLVT KGANLVPLLG IDVWEHAYYL
201: QYKNVRPDYL SNIWKVMNWK YAGEVYENAT A

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.