Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 7
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36283 | Canola | cytosol | 73.59 | 94.44 |
| CDY00976 | Canola | mitochondrion | 88.31 | 88.31 |
| Bra034154.1-P | Field mustard | mitochondrion | 87.01 | 87.01 |
| Bra029879.1-P | Field mustard | mitochondrion | 86.15 | 86.15 |
| CDY08564 | Canola | mitochondrion | 85.71 | 85.71 |
| CDY08566 | Canola | mitochondrion | 85.71 | 85.71 |
| Solyc06g049080.2.1 | Tomato | extracellular, nucleus, plastid | 74.89 | 75.88 |
| PGSC0003DMT400042937 | Potato | mitochondrion | 74.89 | 75.88 |
| KRH64185 | Soybean | mitochondrion | 77.06 | 74.17 |
| Os05t0323900-01 | Rice | mitochondrion | 73.59 | 73.59 |
| TraesCS2A01G537100.1 | Wheat | mitochondrion | 73.16 | 73.16 |
| KRH53764 | Soybean | mitochondrion | 76.19 | 73.03 |
| TraesCS2B01G567600.1 | Wheat | mitochondrion | 70.56 | 72.44 |
| Zm00001d037859_P002 | Maize | mitochondrion | 73.59 | 72.34 |
| TraesCS2D01G538300.1 | Wheat | mitochondrion | 72.29 | 72.29 |
| EES17972 | Sorghum | mitochondrion | 72.73 | 72.1 |
| GSMUA_Achr2P18870_001 | Banana | mitochondrion, unclear | 74.46 | 70.2 |
| GSMUA_Achr3P09840_001 | Banana | mitochondrion | 72.29 | 69.29 |
| Zm00001d009990_P001 | Maize | mitochondrion | 72.29 | 68.72 |
| GSMUA_Achr8P21350_001 | Banana | mitochondrion | 70.13 | 68.07 |
| HORVU2Hr1G117740.2 | Barley | mitochondrion, plastid | 71.86 | 65.61 |
| GSMUA_Achr3P18000_001 | Banana | mitochondrion | 68.4 | 65.02 |
| AT3G56350.1 | Thale cress | extracellular | 66.23 | 63.49 |
| VIT_13s0067g02990.t01 | Wine grape | mitochondrion, plastid | 73.16 | 59.72 |
| AT4G25100.2 | Thale cress | plastid | 28.57 | 31.13 |
| AT5G23310.1 | Thale cress | plastid | 29.87 | 26.24 |
| AT5G51100.1 | Thale cress | plastid | 33.33 | 25.25 |
Protein Annotations
| Gene3D:1.10.287.990 | MapMan:10.2.2.2 | Gene3D:2.40.500.20 | PDB:4C7U | EntrezGene:820263 | ProteinID:AAF01529.1 |
| ProteinID:AEE74977.1 | EMBL:AF061518 | ArrayExpress:AT3G10920 | EnsemblPlantsGene:AT3G10920 | RefSeq:AT3G10920 | TAIR:AT3G10920 |
| RefSeq:AT3G10920-TAIR-G | EnsemblPlants:AT3G10920.1 | TAIR:AT3G10920.1 | EMBL:AY059807 | EMBL:AY072495 | EMBL:AY085319 |
| Unigene:At.11023 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004784 | GO:GO:0005488 |
| GO:GO:0005507 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0005759 | GO:GO:0006801 | GO:GO:0006950 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009790 | GO:GO:0009791 |
| GO:GO:0009793 | GO:GO:0009987 | GO:GO:0010043 | GO:GO:0016491 | GO:GO:0019430 | GO:GO:0042742 |
| GO:GO:0046872 | GO:GO:0055114 | InterPro:IPR036314 | InterPro:IPR036324 | Symbol:MSD1 | InterPro:Mn/Fe_SOD |
| InterPro:Mn/Fe_SOD_BS | InterPro:Mn/Fe_SOD_C | InterPro:Mn/Fe_SOD_N | InterPro:Mn/Fe_SOD_N_sf | RefSeq:NP_187703.1 | UniProt:O81235 |
| PFAM:PF00081 | PFAM:PF02777 | PIRSF:PIRSF000349 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PRINTS:PR01703 | ScanProsite:PS00088 | PANTHER:PTHR11404 | PANTHER:PTHR11404:SF6 | InterPro:SOD_C_sf | SUPFAM:SSF46609 |
| SUPFAM:SSF54719 | UniParc:UPI0000135BFC | SEG:seg | : | : | : |
Description
MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
Coordinates
chr3:+:3417940..3419892
Molecular Weight (calculated)
25445.3 Da
IEP (calculated)
8.835
GRAVY (calculated)
-0.338
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.