Factsheet for GSMUA_Achr2P18870_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, unclear

Predictor Summary:

plastid 1
mitochondrion 9

Predictors

GFP

MS/MS

Papers

unclear: 20177697

msms PMID: 20177697 doi

A Vertommen, B Panis, R Swennen, SC Carpentier

Division of Crop Biotechnics, Department of Biosystems, K U Leuven, Leuven, Belgium. Annelies.vertommen@biw.kuleuven.be

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P09840_001	Banana	mitochondrion	85.71	87.14
GSMUA_Achr8P21350_001	Banana	mitochondrion	81.63	84.03
CDY36283	Canola	cytosol	59.18	80.56
GSMUA_Achr3P18000_001	Banana	mitochondrion	79.18	79.84
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	71.43	76.75
Os05t0323900-01	Rice	mitochondrion	72.24	76.62
EES17972	Sorghum	mitochondrion	72.24	75.97
Zm00001d037859_P002	Maize	mitochondrion	71.84	74.89
CDY00976	Canola	mitochondrion	70.61	74.89
TraesCS2B01G567600.1	Wheat	mitochondrion	68.57	74.67
AT3G10920.1	Thale cress	mitochondrion	70.2	74.46
TraesCS2A01G537100.1	Wheat	mitochondrion	70.2	74.46
PGSC0003DMT400042937	Potato	mitochondrion	68.98	74.12
KRH64185	Soybean	mitochondrion	72.24	73.75
Bra034154.1-P	Field mustard	mitochondrion	69.39	73.59
TraesCS2D01G538300.1	Wheat	mitochondrion	69.39	73.59
KRH53764	Soybean	mitochondrion	72.24	73.44
Zm00001d009990_P001	Maize	mitochondrion	72.24	72.84
Bra029879.1-P	Field mustard	mitochondrion	68.16	72.29
CDY08564	Canola	mitochondrion	68.16	72.29
CDY08566	Canola	mitochondrion	68.16	72.29
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	67.35	65.22
VIT_13s0067g02990.t01	Wine grape	mitochondrion, plastid	69.39	60.07
GSMUA_Achr10P...	Banana	vacuole	24.9	27.11
GSMUA_Achr10P...	Banana	mitochondrion	24.9	25.63
GSMUA_Achr11P...	Banana	plastid	28.57	23.26

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	Gene3D:2.40.500.20	GO:GO:0003674	GO:GO:0003824	GO:GO:0004784
GO:GO:0005488	GO:GO:0006801	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016491	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr2G18870_001	EnsemblPlants:GSMUA_Achr2P18870_001
EnsemblPlants:GSMUA_Achr2T18870_001	InterPro:IPR036314	InterPro:IPR036324	UniProt:M0S978	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS
InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf	PFAM:PF00081	PFAM:PF02777	PIRSF:PIRSF000349
PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6	InterPro:SOD_C_sf	SUPFAM:SSF46609
SUPFAM:SSF54719	UniParc:UPI000295E600	:	:	:	:

Description

Superoxide dismutase [Mn], mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr2G18870_001]

Coordinates

chr2:+:19096840..19101925

Molecular Weight (calculated)

26827.0 Da

IEP (calculated)

7.950

GRAVY (calculated)

-0.215

Length

245 amino acids

Sequence
(BLAST)

001: MALRTLFTKK SLALASAFRP IAVASAAGDQ RLGSGLSQTR GLTVAALPDL PYDYGALEPA ISGEIMRLHH QKHHQAYVTN YNNALEQLEA AIAKGDATAV
101: VRLQNAIKFN GGGHVNHSIF WKNLKPVNEG GGEPPHSSLG WAIDTDFGSL EALVQKMNAE GAALQGSGWV WLALDKGFKK LTVETTANQD PLVTKGANLV
201: PLLGIDVWEH AYYLQYKNVR PDYLKNIWKV IDWKYASEVY EKETA

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.