Factsheet for VIT_13s0067g02990.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36283	Canola	cytosol	51.59	81.11
Solyc06g049080.2.1	Tomato	extracellular, nucleus, plastid	60.42	75.0
CDY00976	Canola	mitochondrion	60.42	74.03
PGSC0003DMT400042937	Potato	mitochondrion	59.36	73.68
Bra029879.1-P	Field mustard	mitochondrion	60.07	73.59
CDY08564	Canola	mitochondrion	60.07	73.59
CDY08566	Canola	mitochondrion	60.07	73.59
AT3G10920.1	Thale cress	mitochondrion	59.72	73.16
Bra034154.1-P	Field mustard	mitochondrion	59.36	72.73
KRH64185	Soybean	mitochondrion	61.48	72.5
KRH53764	Soybean	mitochondrion	60.78	71.37
GSMUA_Achr2P18870_001	Banana	mitochondrion, unclear	60.07	69.39
GSMUA_Achr3P09840_001	Banana	mitochondrion	57.6	67.63
EES17972	Sorghum	mitochondrion	55.48	67.38
Zm00001d037859_P002	Maize	mitochondrion	55.83	67.23
GSMUA_Achr8P21350_001	Banana	mitochondrion	56.54	67.23
VIT_06s0004g07950.t01	Wine grape	mitochondrion	54.06	67.11
TraesCS2A01G537100.1	Wheat	mitochondrion	54.42	66.67
Os05t0323900-01	Rice	mitochondrion	54.06	66.23
TraesCS2B01G567600.1	Wheat	mitochondrion	52.65	66.22
TraesCS2D01G538300.1	Wheat	mitochondrion	53.71	65.8
GSMUA_Achr3P18000_001	Banana	mitochondrion	55.48	64.61
Zm00001d009990_P001	Maize	mitochondrion	55.48	64.61
HORVU2Hr1G117740.2	Barley	mitochondrion, plastid	57.24	64.03
VIT_16s0013g00260.t01	Wine grape	plastid	27.92	25.82
VIT_10s0042g00100.t01	Wine grape	mitochondrion	24.73	21.81

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.2	EntrezGene:100233137	wikigene:100233137	Gene3D:2.40.500.20	ProteinID:ABX79342
ProteinID:ABX79342.1	EMBL:AM468072	ProteinID:CAN61687	ProteinID:CAN61687.1	ProteinID:CCB49788	ProteinID:CCB49788.1
EMBL:EU280161	UniProt:F6HC76	EMBL:FN595514	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0004784	GO:GO:0005488	GO:GO:0005507	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006801	GO:GO:0006950	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628	GO:GO:0009651	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009987	GO:GO:0010043	GO:GO:0016491	GO:GO:0019430
GO:GO:0042742	GO:GO:0046872	GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	EntrezGene:MNSOD
wikigene:MNSOD	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_BS	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf
PFAM:PF00081	PFAM:PF02777	PRINTS:PR01703	ScanProsite:PS00088	PANTHER:PTHR11404	PANTHER:PTHR11404:SF6
InterPro:SOD_C_sf	SUPFAM:SSF46609	SUPFAM:SSF54719	TIGR:TC51764	UniParc:UPI000210A3DA	ArrayExpress:VIT_13s0067g02990
EnsemblPlantsGene:VIT_13s0067g02990	EnsemblPlants:VIT_13s0067g02990.t01	unigene:Vvi.7748	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:+:1602834..1606756

Molecular Weight (calculated)

31457.9 Da

IEP (calculated)

9.753

GRAVY (calculated)

-0.364

Length

283 amino acids

Sequence
(BLAST)

001: MGWFQIGPKQ AQQVKISGLG LKFKGTPEKP RPASPTVKFS PFVHCRRHTR LLQSSMALRT LITRKSLGLG LGVSQSVRGL QTVSLPDLPY DYGALEPAIS
101: GEIMKLHHQK HHQTYITNYN KALEQLHEAM EKGDSSTVVK LQGAIKFNGG GHVNHSIFWK NLTPVHEGGG EPPKGSLGWA IDTHFGSMEA LVAKINSEGA
201: AVQGSGWVWL GLDKDLKKLV VETTANQDPL VTKGPNLVPL LGIDVWEHAY YLQYKNVRPD YLKNVWKVID WKYASEVYEK ECP

Best Arabidopsis Sequence Match ( AT3G10920.1 )
(BLAST)

001: MAIRCVASRK TLAGLKETSS RLLRIRGIQT FTLPDLPYDY GALEPAISGE IMQIHHQKHH QAYVTNYNNA LEQLDQAVNK GDASTVVKLQ SAIKFNGGGH
101: VNHSIFWKNL APSSEGGGEP PKGSLGSAID AHFGSLEGLV KKMSAEGAAV QGSGWVWLGL DKELKKLVVD TTANQDPLVT KGGSLVPLVG IDVWEHAYYL
201: QYKNVRPEYL KNVWKVINWK YASEVYEKEN N

Arabidopsis Description

MSD1Superoxide dismutase [Mn] 1, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O81235]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.