Factsheet for Zm00001d036135_P003

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012290_P001
Zm00001d014632_P001
Zm00001d025106_P003
Zm00001d036135_P003
Zm00001d038235_P001
Zm00001d042764_P001
Zm00001d045384_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	Zm00001d012290_P001	AT3G54290.1	21798944
AT5G23310.1	Zm00001d042764_P001	AT3G54290.1	21798944
AT5G23310.1	Zm00001d014632_P001	AT5G23310.1	18996978
AT5G23310.1	Zm00001d025106_P003	AT5G23310.1	18996978
AT5G23310.1	Zm00001d036135_P003	AT5G23310.1	18996978
AT5G23310.1	Zm00001d045384_P003	AT5G23310.1	18996978
AT5G23310.1	Zm00001d038235_P001	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045384_P003	Maize	mitochondrion	61.62	87.06
Zm00001d014632_P001	Maize	mitochondrion	42.96	79.22
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	51.06	77.96
Os06t0143000-01	Rice	plastid	67.61	75.29
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	65.85	71.92
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	65.14	71.15
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	64.79	70.5
GSMUA_Achr10P...	Banana	vacuole	52.82	66.67
GSMUA_Achr10P...	Banana	mitochondrion	53.52	63.87
CDY45763	Canola	plastid	53.17	57.41
CDX88013	Canola	plastid	53.17	57.2
Bra009670.1-P	Field mustard	plastid	52.46	56.65
CDY16845	Canola	plastid	52.46	56.65
CDX87176	Canola	plastid	51.76	56.54
AT5G23310.1	Thale cress	plastid	52.11	56.27
Bra026503.1-P	Field mustard	plastid	52.11	56.27
HORVU7Hr1G020590.12	Barley	cytosol, plastid	65.49	54.87
Solyc02g021140.2.1	Tomato	nucleus	46.83	52.78
PGSC0003DMT400046236	Potato	plastid	46.13	50.78
KRG89844	Soybean	nucleus	49.3	45.9
VIT_10s0042g00100.t01	Wine grape	mitochondrion	51.41	45.48
Zm00001d037859_P002	Maize	mitochondrion	21.13	25.53
Zm00001d009990_P001	Maize	mitochondrion	21.13	24.69
Zm00001d045538_P001	Maize	plastid	30.63	22.54
Zm00001d038235_P001	Maize	cytosol	0.35	6.67

Protein Annotations

Gene3D:1.10.287.990	MapMan:10.2.2.1	Gene3D:2.40.500.20	EntrezGene:541646	UniProt:A0A1D6LKU6	ProteinID:AQK80327.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0019430	GO:GO:0046872	GO:GO:0055114
InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf
PFAM:PF00081	PFAM:PF02777	PRINTS:PR01703	PANTHER:PTHR42769	PANTHER:PTHR42769:SF7	InterPro:SOD_C_sf
SUPFAM:SSF46609	SUPFAM:SSF54719	UniParc:UPI0008432A8E	EnsemblPlantsGene:Zm00001d036135	EnsemblPlants:Zm00001d036135_P003	EnsemblPlants:Zm00001d036135_T003
SEG:seg	:	:	:	:	:

Description

Superoxide dismutase

Coordinates

chr6:+:73863295..73874255

Molecular Weight (calculated)

32432.0 Da

IEP (calculated)

9.151

GRAVY (calculated)

-0.350

Length

284 amino acids

Sequence
(BLAST)

001: MAASALHLRL HPSPPAGVKL QQRKLRSKIQ RQGGLSRRFS KVVSYYGLTT PPYKLDALEP YMSKRTVELH WGKHHQDYVD GLNKQLATSP LYGYTLEDLI
101: KEAYNNGNPL PEYNNAAQVW NHHFFWESMQ PEGGGLPEGG VLQQIEKDFG SFTNFREEFI RSALQLLGSG WVWLVLKRNE RKLSVVHTRN AISPLAFGDI
201: VSNHQPRLVG GKDMDYEFLD FISCQILTLL LLSPARLLLR LQGDDKLTYV TNFMDHLVSW HTVTLRMMRA ESFVNLGEPN IPEA

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.