Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7A01G090400.1 | Wheat | mitochondrion, plastid | 94.64 | 95.0 |
TraesCS7D01G086400.1 | Wheat | mitochondrion, plastid | 93.1 | 93.46 |
KXG19271 | Sorghum | plastid | 76.63 | 76.63 |
Os06t0143000-01 | Rice | plastid | 73.95 | 75.69 |
Zm00001d025106_P003 | Maize | cytosol, mitochondrion, plastid | 51.72 | 72.58 |
Zm00001d045384_P003 | Maize | mitochondrion | 55.56 | 72.14 |
GSMUA_Achr10P... | Banana | vacuole | 60.54 | 70.22 |
Zm00001d014632_P001 | Maize | mitochondrion | 39.85 | 67.53 |
GSMUA_Achr10P... | Banana | mitochondrion | 61.3 | 67.23 |
HORVU7Hr1G020590.12 | Barley | cytosol, plastid | 86.97 | 66.96 |
Zm00001d036135_P003 | Maize | mitochondrion, plastid | 70.5 | 64.79 |
CDY16845 | Canola | plastid | 59.77 | 59.32 |
Bra026503.1-P | Field mustard | plastid | 59.77 | 59.32 |
CDY45763 | Canola | plastid | 59.39 | 58.94 |
CDX87176 | Canola | plastid | 58.62 | 58.85 |
CDX88013 | Canola | plastid | 59.39 | 58.71 |
AT5G23310.1 | Thale cress | plastid | 59.0 | 58.56 |
Bra009670.1-P | Field mustard | plastid | 59.0 | 58.56 |
Solyc02g021140.2.1 | Tomato | nucleus | 54.41 | 56.35 |
PGSC0003DMT400046236 | Potato | plastid | 53.26 | 53.88 |
KRG89844 | Soybean | nucleus | 58.62 | 50.16 |
VIT_10s0042g00100.t01 | Wine grape | mitochondrion | 58.24 | 47.35 |
TraesCS2A01G537100.1 | Wheat | mitochondrion | 26.44 | 29.87 |
TraesCS4A01G434000.1 | Wheat | plastid | 36.4 | 24.3 |
TraesCS7A01G048600.1 | Wheat | mitochondrion | 36.02 | 23.92 |
Protein Annotations
Gene3D:1.10.287.990 | MapMan:10.2.2.1 | Gene3D:2.40.500.20 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004784 |
GO:GO:0005488 | GO:GO:0006801 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
GO:GO:0046872 | GO:GO:0055114 | InterPro:IPR036314 | InterPro:IPR036324 | InterPro:Mn/Fe_SOD | InterPro:Mn/Fe_SOD_BS |
InterPro:Mn/Fe_SOD_C | InterPro:Mn/Fe_SOD_N | InterPro:Mn/Fe_SOD_N_sf | PFAM:PF00081 | PFAM:PF02777 | PIRSF:PIRSF000349 |
PRINTS:PR01703 | ScanProsite:PS00088 | PANTHER:PTHR42769 | PANTHER:PTHR42769:SF7 | InterPro:SOD_C_sf | SUPFAM:SSF46609 |
SUPFAM:SSF54719 | EnsemblPlantsGene:TraesCS4A01G390300 | EnsemblPlants:TraesCS4A01G390300.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:-:667349594..667351134
Molecular Weight (calculated)
29814.6 Da
IEP (calculated)
8.049
GRAVY (calculated)
-0.429
Length
261 amino acids
Sequence
(BLAST)
(BLAST)
001: MLLPMRGLPA APPRPLAHPH ASPAPPPPSL LSPRRRRPSR RLSKVVSYYG LTTPPYKTDA LEPYMSRRAV ELHWGKHQQG HVDGLNKQLA ISPLYGHTLE
101: DLIKEAYNNG NPLPEYNDAA EVWNHHFFWE SMQPDGGGSP EAGVLQQIEK DFGSFFNFRE EFMRSALSLL GSGWVWLVLK RSERKLEVVH TRNAINPLAF
201: GDIPIISLDL WEHAYYLDYK DDRRTYVSNF LDHLVSWHTV TLRMMRAEAF VNLGEPTIPV A
101: DLIKEAYNNG NPLPEYNDAA EVWNHHFFWE SMQPDGGGSP EAGVLQQIEK DFGSFFNFRE EFMRSALSLL GSGWVWLVLK RSERKLEVVH TRNAINPLAF
201: GDIPIISLDL WEHAYYLDYK DDRRTYVSNF LDHLVSWHTV TLRMMRAEAF VNLGEPTIPV A
001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA
Arabidopsis Description
FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.