Factsheet for Zm00001d014632_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012290_P001
Zm00001d014632_P001
Zm00001d025106_P003
Zm00001d036135_P003
Zm00001d038235_P001
Zm00001d042764_P001
Zm00001d045384_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23310.1	Zm00001d012290_P001	AT3G54290.1	21798944
AT5G23310.1	Zm00001d042764_P001	AT3G54290.1	21798944
AT5G23310.1	Zm00001d014632_P001	AT5G23310.1	18996978
AT5G23310.1	Zm00001d025106_P003	AT5G23310.1	18996978
AT5G23310.1	Zm00001d036135_P003	AT5G23310.1	18996978
AT5G23310.1	Zm00001d045384_P003	AT5G23310.1	18996978
AT5G23310.1	Zm00001d038235_P001	AT5G51100.1	18996978

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025106_P003	Maize	cytosol, mitochondrion, plastid	79.22	65.59
Zm00001d036135_P003	Maize	mitochondrion, plastid	79.22	42.96
Os06t0143000-01	Rice	plastid	68.83	41.57
TraesCS7A01G090400.1	Wheat	mitochondrion, plastid	68.83	40.77
TraesCS7D01G086400.1	Wheat	mitochondrion, plastid	67.53	40.0
TraesCS4A01G390300.1	Wheat	mitochondrion, plastid	67.53	39.85
Zm00001d045384_P003	Maize	mitochondrion	51.95	39.8
GSMUA_Achr10P...	Banana	vacuole	57.14	39.11
GSMUA_Achr10P...	Banana	mitochondrion	56.49	36.55
CDY45763	Canola	plastid	54.55	31.94
CDX88013	Canola	plastid	54.55	31.82
Solyc02g021140.2.1	Tomato	nucleus	51.95	31.75
CDY16845	Canola	plastid	53.9	31.56
AT5G23310.1	Thale cress	plastid	53.9	31.56
Bra026503.1-P	Field mustard	plastid	53.9	31.56
CDX87176	Canola	plastid	53.25	31.54
Bra009670.1-P	Field mustard	plastid	53.25	31.18
HORVU7Hr1G020590.12	Barley	cytosol, plastid	68.18	30.97
PGSC0003DMT400046236	Potato	plastid	50.65	30.23
VIT_10s0042g00100.t01	Wine grape	mitochondrion	53.9	25.86
KRG89844	Soybean	nucleus	50.65	25.57
Zm00001d037859_P002	Maize	mitochondrion	20.13	13.19
Zm00001d045538_P001	Maize	plastid	31.82	12.69
Zm00001d009990_P001	Maize	mitochondrion	19.48	12.35
Zm00001d038235_P001	Maize	cytosol	0.65	6.67

Protein Annotations

Gene3D:1.10.287.990	EntrezGene:103626390	Gene3D:2.40.500.20	MapMan:35.1	UniProt:A0A1D6GUM7	ProteinID:AQK66680.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004784	GO:GO:0005488	GO:GO:0006801	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016491	GO:GO:0019430	GO:GO:0046872
GO:GO:0055114	InterPro:IPR036314	InterPro:IPR036324	InterPro:Mn/Fe_SOD_C	InterPro:Mn/Fe_SOD_N	InterPro:Mn/Fe_SOD_N_sf
PFAM:PF00081	PFAM:PF02777	PANTHER:PTHR42769	PANTHER:PTHR42769:SF7	InterPro:SOD_C_sf	SUPFAM:SSF46609
UniParc:UPI000843F5AA	EnsemblPlantsGene:Zm00001d014632	EnsemblPlants:Zm00001d014632_P001	EnsemblPlants:Zm00001d014632_T001	SEG:seg	:

Description

Superoxide dismutase [Fe] 3 chloroplastic

Coordinates

chr5:+:56752087..56756057

Molecular Weight (calculated)

17805.0 Da

IEP (calculated)

7.177

GRAVY (calculated)

-0.675

Length

154 amino acids

Sequence
(BLAST)

001: MGYAEIAIRP SGSGKKIQRQ GGLSRRFSNV SYYGLTTPPY KLDALEPYMS KRTVELHWGK HHQDYMDGLN NQLATSPLYG YTLEDLIKKA YNNDNPLPEY
101: NNTAQHAYYL DYKDDKLTYV TNFMDHLVSW HTVTLRMMRA ESFVNLGEPN ILEA

Best Arabidopsis Sequence Match ( AT5G23310.1 )
(BLAST)

001: MSSCVVTTSC FYTISDSSIR LKSPKLLNLS NQQRRRSLRS RGGLKVEAYY GLKTPPYPLD ALEPYMSRRT LEVHWGKHHR GYVDNLNKQL GKDDRLYGYT
101: MEELIKATYN NGNPLPEFNN AAQVYNHDFF WESMQPGGGD TPQKGVLEQI DKDFGSFTNF REKFTNAALT QFGSGWVWLV LKREERRLEV VKTSNAINPL
201: VWDDIPIICV DVWEHSYYLD YKNDRAKYIN TFLNHLVSWN AAMSRMARAE AFVNLGEPNI PIA

Arabidopsis Description

FSD3Superoxide dismutase [Fe] 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FMX0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.