Factsheet for VIT_12s0035g01210.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g05810.t01	Wine grape	cytosol	89.29	89.29
VIT_13s0106g00090.t01	Wine grape	cytosol, mitochondrion, nucleus	23.21	81.25
Os01t0885000-01	Rice	cytosol	75.0	75.68
GSMUA_Achr10P...	Banana	cytosol	27.68	68.89

Protein Annotations

Gene3D:1.10.760.10	EntrezGene:100266092	wikigene:100266092	MapMan:2.4.4.1	ProteinID:CBI29682	ProteinID:CBI29682.3
InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c_1A/1B	UniProt:D7TGR0	EMBL:FN595990	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005758	GO:GO:0006091	GO:GO:0006122	GO:GO:0006123	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0020037
GO:GO:0046872	GO:GO:0055114	GO:GO:0070469	InterPro:IPR009056	InterPro:IPR036909	EntrezGene:LOC100266092
wikigene:LOC100266092	PFAM:PF00034	PRINTS:PR00604	PFscan:PS51007	PANTHER:PTHR11961	PANTHER:PTHR11961:SF9
SUPFAM:SSF46626	TIGR:TC59140	UniParc:UPI00015CC25C	ArrayExpress:VIT_12s0035g01210	EnsemblPlantsGene:VIT_12s0035g01210	EnsemblPlants:VIT_12s0035g01210.t01
unigene:Vvi.9021	RefSeq:XP_002265266	RefSeq:XP_002265266.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:20990959..20997341

Molecular Weight (calculated)

11974.2 Da

IEP (calculated)

9.826

GRAVY (calculated)

-0.466

Length

112 amino acids

Sequence
(BLAST)

001: MATFADAPAG NAAAGEKIFR TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTAGYSYSAA NKNMAVAWGE NTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKES TA

Best Arabidopsis Sequence Match ( AT1G22840.1 )
(BLAST)

001: MASFDEAPPG NAKAGEKIFR TKCAQCHTVE AGAGHKQGPN LNGLFGRQSG TTAGYSYSAA NKNKAVEWEE KALYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKES TAPK

Arabidopsis Description

CYTC-1CYTC-1 [Source:UniProtKB/TrEMBL;Acc:A0A178W284]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.