CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G058280.1	Barley	extracellular, golgi, mitochondrion	58.2	81.61
HORVU3Hr1G055030.1	Barley	mitochondrion, peroxisome, plastid, vacuole	57.38	80.46
HORVU2Hr1G070240.1	Barley	golgi, mitochondrion, vacuole	27.87	77.27
AT2G07768.1	Thale cress	mitochondrion	87.7	69.48
CDY17575	Canola	mitochondrion	50.0	48.41
CDY17565	Canola	mitochondrion	43.44	33.54
TraesCS1B01G451000.1	Wheat	mitochondrion	65.57	27.12
TraesCS6D01G200900.1	Wheat	plastid	63.11	26.92
CDY45536	Canola	mitochondrion	45.9	26.92
TraesCS7D01G533300.1	Wheat	endoplasmic reticulum, mitochondrion, plasma membrane	64.75	26.78
TraesCS2A01G239800.1	Wheat	mitochondrion	63.93	26.44
TraesCS6D01G375100.1	Wheat	mitochondrion	59.84	23.62
GSMUA_AchrUn_...	Banana	plasma membrane	54.92	18.36
BAC19893	Rice	endoplasmic reticulum	68.03	13.97
TraesCS7D01G238600.1	Wheat	plasma membrane	63.93	13.59
HORVU2Hr1G086550.1	Barley	plasma membrane	65.57	13.58
BAV58158	Barley	plasma membrane	65.57	13.58
GRMZM5G867512_P01	Maize	mitochondrion	64.75	12.74
CDY04726	Canola	plastid	2.46	3.53
HORVU2Hr1G070250.1	Barley	extracellular, vacuole	1.64	2.38
CDY17583	Canola	mitochondrion	1.64	1.01
CDY45509	Canola	endoplasmic reticulum, vacuole	1.64	0.52

Protein Annotations

MapMan:2.4.4.2.3.2	GO:A0A078JTR2	UniProt:A0A078JTR2	EnsemblPlants:CDY69820	ProteinID:CDY69820	ProteinID:CDY69820.1
InterPro:Cyt_c_biogenesis	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0015232	GO:GO:0015886	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0017004
GO:GO:0020037	EnsemblPlantsGene:GSBRNA2T00092797001	PRINTS:PR01410	PANTHER:PTHR43653	PANTHER:PTHR43653:SF1	TMHMM:TMhelix
UniParc:UPI0004EDDB7B	:	:	:	:	:

Description

BnaUnng03430DBnaUnng03430D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JTR2]

Coordinates

chrLK040431:+:3172..3766

Molecular Weight (calculated)

14296.8 Da

IEP (calculated)

12.274

GRAVY (calculated)

-0.056

Length

122 amino acids

Sequence
(BLAST)

001: MERKRPLLRL FVGPPARTQW SGWLVVSGSR RKCFFYASGT FSIRSGLLAP VHSFATDDTR GIFLWWFFLL MTGISMILFY QMKQQASVRR TYKKEMVVAR
101: STLVHLRHSA RAQPRPVMLW KN

Best Arabidopsis Sequence Match ( AT2G07768.1 )
(BLAST)

001: MERKRPLLRL FVGPPARTQW SGWLVVSGSR RNASFMPRVL ATARIHSVIL PLLHSWTSFL NIVTFPCCVS GTFSIRSGLL APVHSFATDD TRGIFLWWFF
101: LLMTGISMIL FYQMKQQASV RRTYKKEMVV ARSTLVHLRH SARAQPRPVM LWKN

Arabidopsis Description

Cytochrome C assembly protein [Source:UniProtKB/TrEMBL;Acc:F4IL90]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.