Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- mitochondrion 1
- plastid 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17583 | Canola | mitochondrion | 61.18 | 26.13 |
| CDY45509 | Canola | endoplasmic reticulum, vacuole | 64.71 | 14.44 |
| CDY69820 | Canola | mitochondrion | 3.53 | 2.46 |
| CDY17575 | Canola | mitochondrion | 3.53 | 2.38 |
| CDY45536 | Canola | mitochondrion | 4.71 | 1.92 |
| CDY17565 | Canola | mitochondrion | 3.53 | 1.9 |
Protein Annotations
| EnsemblPlants:CDY04726 | EnsemblPlantsGene:GSBRNA2T00119366001 | PANTHER:PTHR30009 | PANTHER:PTHR30009:SF23 | ProteinID:CDY04726 | ProteinID:CDY04726.1 |
| UniParc:UPI0004EDB8C5 | MapMan:2.4.4.2.3.2 | : | : | : | : |
Description
BnaC05g18630D
Coordinates
chrLK031957:-:164240..164497
Molecular Weight (calculated)
9186.0 Da
IEP (calculated)
6.801
GRAVY (calculated)
-0.002
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MVSSELLGVS AMVLHPLDAW RSRGSREGKR THPLLHLARD DKERASSIDE LKIDGALGIA LFFSPFLSST AGLYLNENAV SFSGA
001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY
Arabidopsis Description
CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.