CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G115140.1	Barley	plasma membrane, plastid, vacuole	41.21	97.62
CDY04726	Canola	plastid	26.13	61.18
CDY45509	Canola	endoplasmic reticulum, vacuole	100.0	52.23
ATMG00830.1	Thale cress	endoplasmic reticulum, vacuole	97.49	50.79
VIT_00s0246g00060.t01	Wine grape	mitochondrion	87.94	44.64
TraesCS4B01G146000.1	Wheat	cytosol, plasma membrane, vacuole	81.91	40.75
PGSC0003DMT400043522	Potato	peroxisome	89.45	40.45
Solyc06g065880.1.1	Tomato	cytosol	13.07	37.68
VIT_00s0332g00130.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	75.88	34.63
CDY45536	Canola	mitochondrion	7.54	7.21
CDY17565	Canola	mitochondrion	5.03	6.33
CDY17575	Canola	mitochondrion	2.01	3.17
HORVU6Hr1G037030.1	Barley	cytosol	0.5	1.69
CDY69820	Canola	mitochondrion	1.01	1.64
GSMUA_Achr5P20920_001	Banana	cytosol, plasma membrane, vacuole	1.01	1.23
HORVU3Hr1G115160.1	Barley	endoplasmic reticulum	0.0	0.0

Protein Annotations

MapMan:2.4.4.2.3.2	GO:A0A078FZ47	UniProt:A0A078FZ47	EnsemblPlants:CDY17583	ProteinID:CDY17583	ProteinID:CDY17583.1
InterPro:Cyt_c_assembly	InterPro:Cyt_c_biogenesis	InterPro:Cyt_c_biogenesis_plant	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015232	GO:GO:0015886
GO:GO:0016020	GO:GO:0016043	GO:GO:0017004	GO:GO:0020037	EnsemblPlantsGene:GSBRNA2T00001773001	PFAM:PF01578
PRINTS:PR01410	PRINTS:PR01412	PANTHER:PTHR30009	PANTHER:PTHR30009:SF23	UniParc:UPI0004EE1D94	SEG:seg

Description

BnaC01g27070DBnaC01g27070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZ47]

Coordinates

chrLK032075:+:671700..672299

Molecular Weight (calculated)

22048.6 Da

IEP (calculated)

10.458

GRAVY (calculated)

-0.210

Length

199 amino acids

Sequence
(BLAST)

001: MSFAPLDAWR SRGSREGKRT HPLLHLARDD KERASSIDEQ RIDGALGIAL FFSPFLSASS DPFVRNFFVC TEPLAESNPV PQDPISAIHP PCIYAGDVAS
101: AEGFGLCRSK MMNGIVALHS PPMRKDAAEK NGTLLRSAGC VGSRITSELF TLKFKHVGAK CYPALLLRSN RSPLMLLRRR FFAFSSFWTG ARSHSTKRY

Best Arabidopsis Sequence Match ( ATMG00830.1 )
(BLAST)

001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY

Arabidopsis Description

CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.