Factsheet for VIT_00s0332g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

plastid 2
mitochondrion 2
endoplasmic reticulum 4
extracellular 3
vacuole 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G115140.1	Barley	plasma membrane, plastid, vacuole	18.12	94.05
VIT_00s0246g00060.t01	Wine grape	mitochondrion	73.62	81.89
HORVU3Hr1G115160.1	Barley	endoplasmic reticulum	13.07	76.0
CDY17583	Canola	mitochondrion	34.63	75.88
CDY45509	Canola	endoplasmic reticulum, vacuole	53.67	61.42
ATMG00830.1	Thale cress	endoplasmic reticulum, vacuole	53.21	60.73
TraesCS4B01G146000.1	Wheat	cytosol, plasma membrane, vacuole	52.29	57.0
Solyc02g050290.1.1	Tomato	cytosol	13.99	55.96
PGSC0003DMT400043522	Potato	peroxisome	47.48	47.05
GSMUA_Achr5P20920_001	Banana	cytosol, plasma membrane, vacuole	16.05	43.21
HORVU6Hr1G037030.1	Barley	cytosol	4.82	35.59

Protein Annotations

MapMan:2.4.4.2.3.2	ProteinID:CCB57595	ProteinID:CCB57595.1	InterPro:Cyt_c_assembly	InterPro:Cyt_c_biogenesis	InterPro:Cyt_c_biogenesis_plant
UniProt:F6HSD6	EMBL:FN596244	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0008150
GO:GO:0009987	GO:GO:0015232	GO:GO:0015886	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0017004	GO:GO:0020037	PFAM:PF01578	PRINTS:PR01410	PRINTS:PR01412	PANTHER:PTHR43653
PANTHER:PTHR43653:SF1	TMHMM:TMhelix	UniParc:UPI00021096A6	ArrayExpress:VIT_00s0332g00130	EnsemblPlantsGene:VIT_00s0332g00130	EnsemblPlants:VIT_00s0332g00130.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:-:23741422..23743947

Molecular Weight (calculated)

49622.5 Da

IEP (calculated)

9.709

GRAVY (calculated)

0.173

Length

436 amino acids

Sequence
(BLAST)

001: MSIYELFHYS LFPCLFVAFT YNTKQPPAFG AAPAFWCILL SFLGLSFRHI DNNLSNYNVL TANAPFFYQI TGTWSNHEGS IFSWCRIPSF YGFLLCYRYD
101: KERASSIDEQ RIDGALGIAL FFSPFLSASS DPFVRNFFVC TEPLAESNPV PQDPISAIHP PCIYAGDVAS AMGFGLCRSK IWNGIVAFHS PPIRKDAAEK
201: NGMLLRSAGC VGSRITSELF TLKFKHVDAK CYPALLLRRN ISLLMQLRRR FFAFSSLWTG ALVDTGREQA KRVDQEPILI WILTCRWFLT VGILPGSWWA
301: HHELGRGGWW FRDPVENASF MPQVLATARI HSVIRPPLYS WTSLLNIVTL PCCVSGTSYI RSGLLAPVHS FATDDTRGIF LWRFFLLMTG ISLILLFQMK
401: LQALGRITYK KEMVVVRRHL RHSARAQPRP VMLWKN

Best Arabidopsis Sequence Match ( ATMG00830.1 )
(BLAST)

001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY

Arabidopsis Description

CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.