CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

nucleus 1
plastid 2
endoplasmic reticulum 3
extracellular 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17583	Canola	mitochondrion	52.23	100.0
HORVU3Hr1G115140.1	Barley	plasma membrane, plastid, vacuole	21.52	97.62
ATMG00830.1	Thale cress	endoplasmic reticulum, vacuole	97.64	97.38
HORVU3Hr1G115160.1	Barley	endoplasmic reticulum	16.27	82.67
TraesCS4B01G146000.1	Wheat	cytosol, plasma membrane, vacuole	78.74	75.0
CDY04726	Canola	plastid	14.44	64.71
VIT_00s0332g00130.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	61.42	53.67
PGSC0003DMT400043522	Potato	peroxisome	56.69	49.09
VIT_00s0246g00060.t01	Wine grape	mitochondrion	45.93	44.64
GSMUA_Achr5P20920_001	Banana	cytosol, plasma membrane, vacuole	18.11	42.59
Solyc06g065880.1.1	Tomato	cytosol	6.82	37.68
CDY45536	Canola	mitochondrion	3.94	7.21
CDY17565	Canola	mitochondrion	2.62	6.33
CDY17575	Canola	mitochondrion	1.05	3.17
HORVU6Hr1G037030.1	Barley	cytosol	0.26	1.69
CDY69820	Canola	mitochondrion	0.52	1.64

Protein Annotations

MapMan:2.4.4.2.3.2	ProteinID:AIZ06190.1	ProteinID:AIZ06265.1	ProteinID:AKD00204.1	ProteinID:CBX48362.1	EnsemblPlants:CDY45509
ProteinID:CDY45509	ProteinID:CDY45509.1	InterPro:Cyt_c_assembly	InterPro:Cyt_c_biogenesis	InterPro:Cyt_c_biogenesis_plant	GO:F8K8T1
UniProt:F8K8T1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987
GO:GO:0015232	GO:GO:0015886	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0017004
GO:GO:0020037	EnsemblPlantsGene:GSBRNA2T00082185001	PFAM:PF01578	PRINTS:PR01410	PRINTS:PR01412	PANTHER:PTHR30009
PANTHER:PTHR30009:SF23	UniParc:UPI00000954BF	SEG:seg	:	:	:

Description

BnaCnng12680DBnaCnng12680D protein [Source:UniProtKB/TrEMBL;Acc:F8K8T1]

Coordinates

chrLK032627:+:99681..100826

Molecular Weight (calculated)

43275.1 Da

IEP (calculated)

10.033

GRAVY (calculated)

-0.138

Length

381 amino acids

Sequence
(BLAST)

001: MSIYEFFHYS LFPGLFVAFT YNKKQPPAFG AAPAFWCILL SFLGLSFCHI PNNLSNYNVL TANAPFFYQI SGTWSNHEGS ILLWCRIPNF YGFFLCYRGR
101: PQSHNVLKQG GHRESLFFFF FSNFVKNSIL SLPRYEQESG LKNQLYTPFV LRTLVDSELR LRRNRTFDGP ALFYAPLDPE RKMSFAPLDA WRSRGSREGK
201: RTHPLLHLAR DDKERASSID EQRIDGALGI ALFFSPFLSA SSDPFVRNFF VCTEPLAESN PVPQDPISAI HPPCIYAGDV ASAEGFGLCR SKMMNGIVAL
301: HSPPMRKDAA EKNGTLLRSA GCVGSRITSE LFTLKFKHVG AKCYPALLLR SNRSPLMLLR RRFFAFSSFW TGARSHSTKR Y

Best Arabidopsis Sequence Match ( ATMG00830.1 )
(BLAST)

001: MSISIYEFFH YSLFPGLFVA FTYNKKQPPA FGAAPAFWCI LLSFLGLSFC HIPNNLSNYN VLTANAPFFY QISGTWSNHE GSILLWCRIP NFYGFFLCYR
101: GRPQSHNVLK QGGHRESLFF FFVSNFVKNS ILSLPRYEQE SGLKNQLYTP FVLRTLVDSE LRSRRNRTFD GPALFYAPLY PERKIKNPLD AWRSRGSREG
201: KRTHPLLHLA RDDKERASSI DEQRIDGALG IALFFSPFLS ASSDPFVRNF FVCTEPLAES NPVPQDPISA IHPPCIYAGD VASAEGFGLC RSKMMNGIVA
301: LHSPPMRKDA AEKNGTLLRS AGCVGSRITS ELFTLKFKHV GAKCYPALLL RSNRSPLMLL RRRFFAFSSF WAGARSHSTK RY

Arabidopsis Description

CCB382CcmFN1 [Source:UniProtKB/TrEMBL;Acc:G1C2S2]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.