Skip to main content
crop-pal logo
Wheat
Search for another protein from :
Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 1
  • extracellular 6
  • endoplasmic reticulum 4
  • vacuole 5
  • plasma membrane 4
  • golgi 4
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid, secretory
ChloroP:plastid
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1B01G451000.1
TraesCS2A01G239800.1
TraesCS6D01G200900.1
TraesCS6D01G375100.1
TraesCS7D01G238600.1
TraesCS7D01G533300.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
ATMG00180.1 TraesCS1B01G451000.1 ATMG00960.1 18644794
ATMG00180.1 TraesCS2A01G239800.1 ATMG00960.1 18644794
ATMG00180.1 TraesCS6D01G200900.1 ATMG00960.1 18644794
ATMG00180.1 TraesCS6D01G375100.1 ATMG00960.1 18644794
ATMG00180.1 TraesCS7D01G238600.1 ATMG00960.1 18644794
ATMG00180.1 TraesCS7D01G533300.1 ATMG00960.1 18644794
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS1B01G475500.1 Wheat extracellular, plasma membrane, vacuole 97.45 97.45
TraesCS1D01G128300.1 Wheat extracellular, plasma membrane, vacuole 96.36 96.36
TraesCS5D01G003300.1 Wheat extracellular, plasma membrane, vacuole 95.64 95.64
TraesCS4D01G146500.1 Wheat endoplasmic reticulum 93.09 93.43
HORVU6Hr1G037070.1 Barley extracellular, plasma membrane, vacuole 92.73 92.73
TraesCS4D01G161300.1 Wheat plasma membrane 92.73 92.39
TraesCS6D01G324000.1 Wheat endoplasmic reticulum, extracellular 68.0 89.47
TraesCS3D01G103300.1 Wheat endoplasmic reticulum, vacuole 95.27 89.12
VIT_03s0063g02270.t01 Wine grape extracellular 14.55 57.97
BAC19894 Rice endoplasmic reticulum, plasma membrane 89.09 56.19
Solyc11g039360.1.1 Tomato vacuole 59.64 47.67
PGSC0003DMT400087800 Potato cytosol, mitochondrion, plastid, vacuole 68.73 47.01
ATMG00180.1 Thale cress plasma membrane 73.09 44.47
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, vacuole 40.36 33.33
CDY45515 Canola mitochondrion 24.0 32.35
CDY17587 Canola mitochondrion 24.0 32.35
AT2G07815.1 Thale cress mitochondrion 24.0 23.66
Protein Annotations
EnsemblPlants:TraesCS3D01G197300.1EnsemblPlantsGene:TraesCS3D01G197300PANTHER:PTHR36010SEG:segTMHMM:TMhelixMapMan:35.1
Description
No Description!
Coordinates
chr3D:+:202650730..202651557
Molecular Weight (calculated)
30465.8 Da
IEP (calculated)
10.658
GRAVY (calculated)
0.144
Length
275 amino acids
Sequence
(BLAST)
001: MVQLQNFFFF ITSMVVPRGM AAPVLLKWFV SRDVPTGASS SSGTIIPIPI TLFPFLVYLH LRKFIRSMDR AKSGVLVKAS RPILLPDKME RSSSARNSLF
101: RFVPVLHFLI IESMGDLSYL ESFCGLLCLQ FFRTLFSLPR DRSAKRERVL RSKGQTLRPK GNEQQNDKMR CRGHPHIERR VEGFGPVAFP APPSSSGACL
201: GGVPPESGLE ALALPTSRLL MAVGHDYYKK VKMNLSISHG GVCIFMLGVL LSCDPMAYVR PVAHASYSIC SGRAA
Best Arabidopsis Sequence Match ( ATMG00180.1 )
(BLAST)
001: MVQLHNFFFF IIFMVVPCGT AAPVLLKWFV SRDVPTGAPF SNGTIIPIPI SSFPLLVYLH SRKIIRSMDG AKSGVLVRAS RPILLPDIIG RSSSETRARK
101: ALFFFVPVLH FRLLESKGDF SYLESFCGVL CLLFFRTFLF LARDRSAKRE RARRRKGQTL RPNGNEQRRN DKMRCSGHPH LDLERRVEGF GPLAFPVPPE
201: LGGACVGGVP PEIGLEALAL PRSRQLMAMA VGHDYYQKVP MKMNISHGGV CICMLGVLLS NTKKIQFTQR LPLGYELHMG KERCCLRGLD HLHGPTFHSI
301: CGNLMIYKPS LTNDRLMFEH DESLHADLLL INFPASYKNG KLEHFLHWWM KNRKHNNFWL TMFPEKRYFR ERTSTAEVAI HTNLFTDLYA SIGTGSSRTG
401: GWYTTIMKLP FIFFIRIGFM LASLGGSPSL LRQLQKDKLR WNRESSVEFI IA
Arabidopsis Description
CCB452CcmFC [Source:UniProtKB/TrEMBL;Acc:G1C2X7]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.