Factsheet for TraesCS1B01G065500.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G451000.1
TraesCS2A01G239800.1
TraesCS6D01G200900.1
TraesCS6D01G375100.1
TraesCS7D01G238600.1
TraesCS7D01G533300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
ATMG00180.1	TraesCS1B01G451000.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS2A01G239800.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G200900.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS6D01G375100.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G238600.1	ATMG00960.1	18644794
ATMG00180.1	TraesCS7D01G533300.1	ATMG00960.1	18644794

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G232500.1	Wheat	extracellular	89.86	93.47
TraesCS7B01G429400.1	Wheat	extracellular	91.79	90.91
TraesCS6B01G131800.1	Wheat	endoplasmic reticulum, extracellular	91.79	90.48
TraesCS6B01G131500.1	Wheat	endoplasmic reticulum, extracellular	91.79	86.36
TraesCS3B01G121300.1	Wheat	endoplasmic reticulum	91.3	85.91
HORVU1Hr1G025070.1	Barley	extracellular	89.86	84.93
TraesCS7B01G047700.1	Wheat	endoplasmic reticulum, extracellular, vacuole	86.96	68.18
TraesCS3B01G121800.1	Wheat	extracellular, plasma membrane, vacuole	89.37	67.03
TraesCS1B01G188800.1	Wheat	extracellular, plasma membrane, vacuole	88.89	66.91
TraesCS1B01G475500.1	Wheat	extracellular, plasma membrane, vacuole	87.92	66.18
TraesCS1B01G352800.1	Wheat	extracellular	87.44	65.82
TraesCS6B01G357400.1	Wheat	extracellular, plasma membrane, vacuole	85.99	65.2
VIT_03s0063g02270.t01	Wine grape	extracellular	20.77	62.32
BAC19894	Rice	endoplasmic reticulum, plasma membrane	86.96	41.28
PGSC0003DMT400087800	Potato	cytosol, mitochondrion, plastid, vacuole	68.12	35.07
Solyc11g039360.1.1	Tomato	vacuole	57.49	34.59
ATMG00180.1	Thale cress	plasma membrane	71.5	32.74
CDY45515	Canola	mitochondrion	31.88	32.35
CDY17587	Canola	mitochondrion	31.88	32.35
AT2G07815.1	Thale cress	mitochondrion	31.88	23.66
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, vacuole	33.33	20.72

Protein Annotations

EnsemblPlants:TraesCS1B01G065500.1

EnsemblPlantsGene:TraesCS1B01G065500

PANTHER:PTHR36010

SEG:seg

TMHMM:TMhelix

MapMan:35.1

Description

No Description!

Coordinates

chr1B:+:49799425..49800048

Molecular Weight (calculated)

23542.2 Da

IEP (calculated)

11.354

GRAVY (calculated)

-0.008

Length

207 amino acids

Sequence
(BLAST)

001: MVQLQNFFFF ITSMVVPRGT ATPVLLKWFV SRDVPTGASS SNGTIIHIPI PLFPFLVYLH LRKFIRSMDR AKSGVLVKAS RPILLPDKME RSSSARNALF
101: RFVPVLYFLI IESMGDLSYL ESFCGLLCLQ FFCTLFSLPR DGSVKRERAL RSKGQTLRPK GNEQQNDKMR YPGHPHIERR VEGFGPVASP PPRRVVLVWG
201: CATRKRA

Best Arabidopsis Sequence Match ( AT2G07815.1 )
(BLAST)

001: MVSECLFRNR RLFGLFVKAQ RNSKHCSCSE EVQFQRWLGS KEVAEPRTKA RNAFSPMNEE MTRRIRSETN SLVSFMYLLA AFAANSQAGE TLSPGSGIDW
101: FRADSGSCCL DYRRIRGAVL GKEMTQLQKK KDRCRLPTRA RSSIGGQEPW SGGKTEVRLL FFREAKLERI EQMVQLHNFF FFIIFMVVPC GTAAPVLLKW
201: FVSRDVPTGA PFSNGTIIPI PISSFPLLVY LHSRKIIRSM DGAKSGVLHA IGQRSVSGRG EGKAKHFGRT GMSNDEMTR

Arabidopsis Description

BEST Arabidopsis thaliana protein match is: cytochrome C biogenesis 452 (TAIR:ATMG00180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryo /.../2996 (source: NCBI BLink). [Source:TAIR;Acc:AT2G07815]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.