Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G285500.1 | Wheat | plastid | 55.89 | 97.35 |
| TraesCS1A01G276300.1 | Wheat | plastid | 53.99 | 94.04 |
| Os05t0443500-01 | Rice | plastid | 47.53 | 84.46 |
| Zm00001d038291_P001 | Maize | plastid | 39.92 | 68.18 |
| EES19611 | Sorghum | plastid | 41.83 | 67.9 |
| Zm00001d010136_P001 | Maize | plastid | 39.54 | 67.53 |
| Solyc05g055280.1.1 | Tomato | cytosol | 24.33 | 65.31 |
| Bra009066.1-P | Field mustard | cytosol | 21.67 | 58.16 |
| Solyc11g006910.1.1 | Tomato | mitochondrion, plastid | 25.86 | 54.4 |
| PGSC0003DMT400060121 | Potato | plastid | 30.8 | 54.0 |
| PGSC0003DMT400061612 | Potato | plastid | 30.04 | 52.67 |
| TraesCS3D01G366600.1 | Wheat | plastid | 30.8 | 52.6 |
| TraesCS5D01G516100.1 | Wheat | plastid | 30.42 | 52.29 |
| TraesCS2D01G292400.1 | Wheat | plastid | 28.14 | 49.33 |
| Solyc04g009710.1.1 | Tomato | plastid | 27.38 | 46.75 |
| TraesCS7D01G322000.1 | Wheat | plastid | 25.1 | 46.15 |
| TraesCS7D01G322100.1 | Wheat | plastid | 23.19 | 43.26 |
| CDY21622 | Canola | plastid | 24.33 | 42.95 |
| AT5G10000.1 | Thale cress | plastid | 23.57 | 41.89 |
| CDX69869 | Canola | plastid | 22.81 | 40.54 |
| TraesCS4D01G014200.1 | Wheat | plastid | 15.59 | 27.33 |
| TraesCS4D01G025700.1 | Wheat | plastid | 15.21 | 21.74 |
Protein Annotations
| MapMan:1.1.5.1 | InterPro:2Fe-2S_ferredoxin-like_sf | InterPro:2Fe-2S_ferredoxin-type | InterPro:2Fe2S_fd_BS | Gene3D:3.10.20.30 | InterPro:Beta-grasp_dom_sf |
| InterPro:Fd_pln | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0022900 | GO:GO:0051536 | GO:GO:0051537 |
| InterPro:IPR001041 | InterPro:IPR012675 | PFAM:PF00111 | ScanProsite:PS00197 | PFscan:PS51085 | PANTHER:PTHR43112 |
| PANTHER:PTHR43112:SF11 | SUPFAM:SSF54292 | TIGRFAMs:TIGR02008 | EnsemblPlantsGene:TraesCS1D01G275800 | EnsemblPlants:TraesCS1D01G275800.2 | TIGR:cd00207 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1D:-:371749633..371751023
Molecular Weight (calculated)
28907.5 Da
IEP (calculated)
11.057
GRAVY (calculated)
-0.621
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MLWHSTPASR GLSPKPPAAG RRPTAHPARG RKRRVPGSQG QRADRQSRAL QQRVCHPSPL LIRRRTRAGH LTTPHSISRS QSPTSLRRLS SPRLRDQRRL
101: LPRLFRRRSI SKMSTATAPG VSFAKFGSGS RAVAPAIRSA SFIGYAKQTP NLSGLRMSNK FRVSAAAVHK VKLISPDGEE HEFEAPEDTY ILEAAENAGV
201: ELPFSCRAGS CSTCAGKMTT GEVDQSEGSF LDENQMGEGY LLTCISYPKA DCVIQTHQEE ELY
101: LPRLFRRRSI SKMSTATAPG VSFAKFGSGS RAVAPAIRSA SFIGYAKQTP NLSGLRMSNK FRVSAAAVHK VKLISPDGEE HEFEAPEDTY ILEAAENAGV
201: ELPFSCRAGS CSTCAGKMTT GEVDQSEGSF LDENQMGEGY LLTCISYPKA DCVIQTHQEE ELY
001: MDQVLYSSYI IKIPVISRIS PSQAQLTTRL NNTTYFGLSS SRGNFGKVFA KESRKVKLIS PEGEEQEIEG NEDCCILESA ENAGLELPYS CRSGTCGTCC
101: GKLVSGKVDQ SLGSFLEEEQ IQKGYILTCI ALPLEDCVVY THKQSDLI
101: GKLVSGKVDQ SLGSFLEEEQ IQKGYILTCI ALPLEDCVVY THKQSDLI
Arabidopsis Description
FD4Probable ferredoxin-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIA7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.