Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G276300.1 | Wheat | plastid | 94.04 | 94.04 |
| Os05t0443500-01 | Rice | plastid | 82.12 | 83.78 |
| Zm00001d038291_P001 | Maize | plastid | 70.2 | 68.83 |
| EES19611 | Sorghum | plastid | 73.51 | 68.52 |
| Zm00001d010136_P001 | Maize | plastid | 68.87 | 67.53 |
| Solyc05g055280.1.1 | Tomato | cytosol | 42.38 | 65.31 |
| Bra009066.1-P | Field mustard | cytosol | 37.75 | 58.16 |
| TraesCS1D01G275800.2 | Wheat | plastid | 97.35 | 55.89 |
| TraesCS1B01G416500.1 | Wheat | cytosol | 35.1 | 54.64 |
| TraesCS3B01G406100.1 | Wheat | plastid | 54.97 | 53.9 |
| Solyc11g006910.1.1 | Tomato | mitochondrion, plastid | 44.37 | 53.6 |
| PGSC0003DMT400060121 | Potato | plastid | 52.98 | 53.33 |
| PGSC0003DMT400061612 | Potato | plastid | 51.66 | 52.0 |
| TraesCS5B01G516000.1 | Wheat | plastid | 52.98 | 51.95 |
| TraesCS2B01G311100.1 | Wheat | plastid | 47.68 | 48.0 |
| TraesCS7B01G226100.1 | Wheat | plastid | 43.71 | 46.15 |
| Solyc04g009710.1.1 | Tomato | plastid | 47.02 | 46.1 |
| TraesCS5B01G517300.1 | Wheat | plastid | 43.71 | 43.71 |
| TraesCS7B01G226200.1 | Wheat | plastid | 40.4 | 42.96 |
| CDY21622 | Canola | plastid | 41.06 | 41.61 |
| AT5G10000.1 | Thale cress | plastid | 40.4 | 41.22 |
| CDX69869 | Canola | plastid | 38.41 | 39.19 |
| TraesCS4B01G015800.1 | Wheat | plastid | 25.83 | 27.46 |
| TraesCS4B01G028100.1 | Wheat | plastid | 27.81 | 22.58 |
Protein Annotations
| MapMan:1.1.5.1 | InterPro:2Fe-2S_ferredoxin-like_sf | InterPro:2Fe-2S_ferredoxin-type | InterPro:2Fe2S_fd_BS | Gene3D:3.10.20.30 | InterPro:Beta-grasp_dom_sf |
| InterPro:Fd_pln | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006091 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009055 | GO:GO:0009987 | GO:GO:0022900 | GO:GO:0051536 | GO:GO:0051537 |
| InterPro:IPR001041 | InterPro:IPR012675 | PFAM:PF00111 | ScanProsite:PS00197 | PFscan:PS51085 | PANTHER:PTHR43112 |
| PANTHER:PTHR43112:SF11 | SUPFAM:SSF54292 | TIGRFAMs:TIGR02008 | EnsemblPlantsGene:TraesCS1B01G285500 | EnsemblPlants:TraesCS1B01G285500.1 | TIGR:cd00207 |
Description
No Description!
Coordinates
chr1B:-:496560830..496561285
Molecular Weight (calculated)
16064.8 Da
IEP (calculated)
4.540
GRAVY (calculated)
-0.232
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTATAPGVS FAKSGAGSRA VAPAIRSASF IGYAKQPPNL SCLRMSNKFR VSAAAVHKVK LISPDGEEHE FEAPEDTYIL EAAENAGVEL PFSCRAGSCS
101: TCAGKMTTGE VDQSEGSFLD ENQMGEGYLL TCISYPKADC VIQTHQEEEL Y
101: TCAGKMTTGE VDQSEGSFLD ENQMGEGYLL TCISYPKADC VIQTHQEEEL Y
001: MDQVLYSSYI IKIPVISRIS PSQAQLTTRL NNTTYFGLSS SRGNFGKVFA KESRKVKLIS PEGEEQEIEG NEDCCILESA ENAGLELPYS CRSGTCGTCC
101: GKLVSGKVDQ SLGSFLEEEQ IQKGYILTCI ALPLEDCVVY THKQSDLI
101: GKLVSGKVDQ SLGSFLEEEQ IQKGYILTCI ALPLEDCVVY THKQSDLI
Arabidopsis Description
FD4Probable ferredoxin-4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FIA7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.