CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015488.1-P	Field mustard	mitochondrion	99.71	99.71
CDY10189	Canola	mitochondrion	96.49	96.77
AT1G06270.1	Thale cress	mitochondrion	90.64	90.38
PGSC0003DMT400004311	Potato	cytosol	19.3	58.93
VIT_12s0028g02610.t01	Wine grape	mitochondrion	56.14	55.98
Solyc01g088490.2.1	Tomato	mitochondrion	52.63	54.05
KRH27010	Soybean	endoplasmic reticulum, mitochondrion	53.51	53.51
PGSC0003DMT400004315	Potato	mitochondrion	52.05	53.45
KRH22320	Soybean	extracellular, plasma membrane	39.77	50.37

Protein Annotations

EnsemblPlants:CDY57815	EnsemblPlantsGene:GSBRNA2T00022727001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF925
PFAM:PF13041	PFscan:PS51375	ProteinID:CDY57815	ProteinID:CDY57815.1	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0004EE2933	UniProt:A0A078J4U7	MapMan:35.1	:	:	:

Description

BnaA10g28040DBnaA10g28040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J4U7]

Coordinates

chrLK033608:-:8175..9558

Molecular Weight (calculated)

38744.6 Da

IEP (calculated)

9.164

GRAVY (calculated)

-0.013

Length

342 amino acids

Sequence
(BLAST)

001: MAYRFTHLRK PLAYSPSRSI PFSRQVSSFE AVEKAIKCAV ETKEYLQIPH LVVSLKEPYQ NSKLFSFLSA FHHHHRIRVI DEILQSFVPV RPRSLPKIVY
101: SSLLTYCLQS SDPLPLSFAI LQRTLRSGCL PNTQTHLLLS DAWLERRGRG SQSVVEIINE MKLIGYSPDT GTCNYLVSSL CAVDKLDEAV RVVEEMGGAG
201: CIPDVESYGA VISSMCLARK TSDVVKIVKE MVSKAGISPR KGMLTKVAAA LRANREIWKA IEMIEFVESR DYPVEFETYE VLVEGCLEVR EYILAGKMVM
301: RMTDKGFIPY IKVRQKVVER LIGIGEWKLA CTVRQRLAEM RS

Best Arabidopsis Sequence Match ( AT1G06270.1 )
(BLAST)

001: MAIRLTHLRK PLAYSRSFDV CIPFFRSISS FEAVEKAIKC AVETKEYLRI PELVVSLKEP YQNSTLFSFL SAFQRHHRIR VIDEILQSFV PVRPRSLPKI
101: VYSSLLTYCL QSSDPLPLSF AILQRTLRSG CLPNPQTHLL LSDAWLERRR GSQSVADIIN EMKLIGYSPD TGTCNYLVSS LCAVDKLDEA IKVVEEMSAA
201: GCIPDVESYG AVINSLCLAR KTTDVVKIVK EMVSKAGISP RKGMLTKVAA ALRANREIWK AIEMIEFVES RDYPVEFESY EVVVEGCLEV REYILAGKVV
301: MRMTDRGFIP YIKVRQKVVE RLINIGEWKL ACTVRQRVSE LRS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g06270 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.