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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • mitochondrion 6
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY10189 Canola mitochondrion 90.67 91.2
Bra015488.1-P Field mustard mitochondrion 90.67 90.94
CDY57815 Canola mitochondrion 90.38 90.64
PGSC0003DMT400004311 Potato cytosol 19.83 60.71
VIT_12s0028g02610.t01 Wine grape mitochondrion 58.02 58.02
KRH27010 Soybean endoplasmic reticulum, mitochondrion 54.81 54.97
Solyc01g088490.2.1 Tomato mitochondrion 52.48 54.05
PGSC0003DMT400004315 Potato mitochondrion 51.9 53.45
KRH22320 Soybean extracellular, plasma membrane 39.94 50.74
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1EntrezGene:837138ProteinID:AAF80224.1ProteinID:AEE27970.1ArrayExpress:AT1G06270
EnsemblPlantsGene:AT1G06270RefSeq:AT1G06270TAIR:AT1G06270RefSeq:AT1G06270-TAIR-GEnsemblPlants:AT1G06270.1TAIR:AT1G06270.1
EMBL:AY065382EMBL:AY084351EMBL:AY096546Unigene:At.28507GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003824GO:GO:0004518GO:GO:0004519GO:GO:0005488GO:GO:0005515
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006139GO:GO:0008150
GO:GO:0008152GO:GO:0009451GO:GO:0009536GO:GO:0009987GO:GO:0016020GO:GO:0016787
GO:GO:0042170GO:GO:0043231GO:GO:0090305InterPro:IPR002885InterPro:IPR011990RefSeq:NP_563765.1
PFAM:PF13041PO:PO:0000293PO:PO:0007057PO:PO:0020094PFscan:PS51375PANTHER:PTHR24015
PANTHER:PTHR24015:SF925InterPro:Pentatricopeptide_repeatUniProt:Q9LNC0TIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sfUniParc:UPI000005EAC8
Description
Pentatricopeptide repeat-containing protein At1g06270 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC0]
Coordinates
chr1:-:1917991..1919760
Molecular Weight (calculated)
38935.8 Da
IEP (calculated)
8.931
GRAVY (calculated)
0.045
Length
343 amino acids
Sequence
(BLAST)
001: MAIRLTHLRK PLAYSRSFDV CIPFFRSISS FEAVEKAIKC AVETKEYLRI PELVVSLKEP YQNSTLFSFL SAFQRHHRIR VIDEILQSFV PVRPRSLPKI
101: VYSSLLTYCL QSSDPLPLSF AILQRTLRSG CLPNPQTHLL LSDAWLERRR GSQSVADIIN EMKLIGYSPD TGTCNYLVSS LCAVDKLDEA IKVVEEMSAA
201: GCIPDVESYG AVINSLCLAR KTTDVVKIVK EMVSKAGISP RKGMLTKVAA ALRANREIWK AIEMIEFVES RDYPVEFESY EVVVEGCLEV REYILAGKVV
301: MRMTDRGFIP YIKVRQKVVE RLINIGEWKL ACTVRQRVSE LRS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.