CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

nucleus 2
mitochondrion 2
extracellular 2
peroxisome 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus, peroxisome
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27010	Soybean	endoplasmic reticulum, mitochondrion	90.37	71.34
VIT_12s0028g02610.t01	Wine grape	mitochondrion	60.74	47.81
PGSC0003DMT400004311	Potato	cytosol	19.26	46.43
Solyc01g088490.2.1	Tomato	mitochondrion	52.96	42.94
PGSC0003DMT400004315	Potato	mitochondrion	52.59	42.64
CDY10189	Canola	mitochondrion	51.48	40.76
AT1G06270.1	Thale cress	mitochondrion	50.74	39.94
Bra015488.1-P	Field mustard	mitochondrion	50.37	39.77
CDY57815	Canola	mitochondrion	50.37	39.77

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:ACUP02008406	ncoils:Coil	EnsemblPlantsGene:GLYMA_13G293000	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR011990	UniProt:K7M2L1	EnsemblPlants:KRH22320	ProteinID:KRH22320	ProteinID:KRH22320.1	PANTHER:PTHR24015
PANTHER:PTHR24015:SF925	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296D022	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:-:39290833..39291865

Molecular Weight (calculated)

29864.7 Da

IEP (calculated)

8.909

GRAVY (calculated)

0.111

Length

270 amino acids

Sequence
(BLAST)

001: MVMGAMMHHR FLLHFCPILN QCLSGRSVSS LQNLEQAVRA ELENLRVQIV DEMLQSFIPI RPRSKPQLAY SYLLSYTLQS SHPFPLALAV LQWTSRSGCL
101: PVPQSHVLLS SAWLDQHCLS HSVANILLQM QSIGYHPDCG TFKVLRGMGG AGCVPDSSSY GTVIGAMSRV RKTAKALDLM KQMGTLVKLL AALRANREIW
201: KAVEMIEFLE KEGNSVGFES YKLVIEGCFE KREYVLAAKA ATGMTEKGLA SIDEWKLACA VGQRFAALKS

Best Arabidopsis Sequence Match ( AT1G06270.1 )
(BLAST)

001: MAIRLTHLRK PLAYSRSFDV CIPFFRSISS FEAVEKAIKC AVETKEYLRI PELVVSLKEP YQNSTLFSFL SAFQRHHRIR VIDEILQSFV PVRPRSLPKI
101: VYSSLLTYCL QSSDPLPLSF AILQRTLRSG CLPNPQTHLL LSDAWLERRR GSQSVADIIN EMKLIGYSPD TGTCNYLVSS LCAVDKLDEA IKVVEEMSAA
201: GCIPDVESYG AVINSLCLAR KTTDVVKIVK EMVSKAGISP RKGMLTKVAA ALRANREIWK AIEMIEFVES RDYPVEFESY EVVVEGCLEV REYILAGKVV
301: MRMTDRGFIP YIKVRQKVVE RLINIGEWKL ACTVRQRVSE LRS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g06270 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.