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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • mitochondrion 3
  • cytosol 4
  • peroxisome 1
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:secretory
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus, peroxisome, plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:secretory
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400004315 Potato mitochondrion 100.0 33.63
Solyc01g088490.2.1 Tomato mitochondrion 96.43 32.43
VIT_12s0028g02610.t01 Wine grape mitochondrion 62.5 20.41
KRH27010 Soybean endoplasmic reticulum, mitochondrion 61.61 20.18
AT1G06270.1 Thale cress mitochondrion 60.71 19.83
CDY10189 Canola mitochondrion 59.82 19.65
Bra015488.1-P Field mustard mitochondrion 58.93 19.3
CDY57815 Canola mitochondrion 58.93 19.3
KRH22320 Soybean extracellular, plasma membrane 46.43 19.26
Protein Annotations
EnsemblPlants:PGSC0003DMT400004311EnsemblPlantsGene:PGSC0003DMG401001710Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR011990InterPro:TPR-like_helical_dom_sfPANTHER:PTHR24015PANTHER:PTHR24015:SF925PGSC:PGSC0003DMG401001710UniParc:UPI0002968F0C
UniProt:M0ZN77MapMan:35.1::::
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401001710]
Coordinates
chr1:-:68302248..68302703
Molecular Weight (calculated)
12700.7 Da
IEP (calculated)
10.066
GRAVY (calculated)
0.143
Length
112 amino acids
Sequence
(BLAST)
001: MVAIFGLSPR KETLVKALAA ILANKEIRRA IEVIEFLTNE GVHIGFECYQ SVLEGCLESR QFILAGKFVI EMTKRGFIPY IRSRQKVVEG LTSIGEWKLA
101: NAVRQRFAEL RS
Best Arabidopsis Sequence Match ( AT1G06270.1 )
(BLAST)
001: MAIRLTHLRK PLAYSRSFDV CIPFFRSISS FEAVEKAIKC AVETKEYLRI PELVVSLKEP YQNSTLFSFL SAFQRHHRIR VIDEILQSFV PVRPRSLPKI
101: VYSSLLTYCL QSSDPLPLSF AILQRTLRSG CLPNPQTHLL LSDAWLERRR GSQSVADIIN EMKLIGYSPD TGTCNYLVSS LCAVDKLDEA IKVVEEMSAA
201: GCIPDVESYG AVINSLCLAR KTTDVVKIVK EMVSKAGISP RKGMLTKVAA ALRANREIWK AIEMIEFVES RDYPVEFESY EVVVEGCLEV REYILAGKVV
301: MRMTDRGFIP YIKVRQKVVE RLINIGEWKL ACTVRQRVSE LRS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g06270 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC0]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.