Factsheet for Bra015488.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57815	Canola	mitochondrion	99.71	99.71
AT1G06270.1	Thale cress	mitochondrion	90.94	90.67
PGSC0003DMT400004311	Potato	cytosol	19.3	58.93
VIT_12s0028g02610.t01	Wine grape	mitochondrion	56.14	55.98
Solyc01g088490.2.1	Tomato	mitochondrion	52.63	54.05
KRH27010	Soybean	endoplasmic reticulum, mitochondrion	53.51	53.51
PGSC0003DMT400004315	Potato	mitochondrion	52.05	53.45
KRH22320	Soybean	extracellular, plasma membrane	39.77	50.37

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra015488	EnsemblPlants:Bra015488.1	EnsemblPlants:Bra015488.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009536	GO:GO:0016020	GO:GO:0042170	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4DG65
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF925	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002545141	SEG:seg	:	:	:

Description

AT1G06270 (E=4e-172) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA10:+:1479938..1480966

Molecular Weight (calculated)

38771.6 Da

IEP (calculated)

9.164

GRAVY (calculated)

-0.021

Length

342 amino acids

Sequence
(BLAST)

001: MAYRFTHLRK PLAYSPSRSI PFSRQVSSFE AVEKAIKCAV ETKEYLQIPH LVVSLKEPYQ NSKLFSFLSA FHHHHRIRVI DEILQSFVPV RPRSLPKIVY
101: SSLLTYCLQS SDPLPLSFAI LQRTLRSGCL PNTQTHLLLS DAWLERRGRG SQSVVEIINE MKLIGYSPDT GTCNYLVSSL CAVDKLDEAV RVVEEMGGAG
201: CIPDVESYGA VINSMCLARK TSDVVKIVKE MVSKAGISPR KGMLTKVAAA LRANREIWKA IEMIEFVESR DYPVEFETYE VLVEGCLEVR EYILAGKMVM
301: RMTDKGFIPY IKVRQKVVER LIGIGEWKLA CTVRQRLAEM RS

Best Arabidopsis Sequence Match ( AT1G06270.1 )
(BLAST)

001: MAIRLTHLRK PLAYSRSFDV CIPFFRSISS FEAVEKAIKC AVETKEYLRI PELVVSLKEP YQNSTLFSFL SAFQRHHRIR VIDEILQSFV PVRPRSLPKI
101: VYSSLLTYCL QSSDPLPLSF AILQRTLRSG CLPNPQTHLL LSDAWLERRR GSQSVADIIN EMKLIGYSPD TGTCNYLVSS LCAVDKLDEA IKVVEEMSAA
201: GCIPDVESYG AVINSLCLAR KTTDVVKIVK EMVSKAGISP RKGMLTKVAA ALRANREIWK AIEMIEFVES RDYPVEFESY EVVVEGCLEV REYILAGKVV
301: MRMTDRGFIP YIKVRQKVVE RLINIGEWKL ACTVRQRVSE LRS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g06270 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.