CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

plastid 3
mitochondrion 4
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22320	Soybean	extracellular, plasma membrane	71.34	90.37
VIT_12s0028g02610.t01	Wine grape	mitochondrion	62.87	62.68
PGSC0003DMT400004311	Potato	cytosol	20.18	61.61
Solyc01g088490.2.1	Tomato	mitochondrion	55.85	57.36
PGSC0003DMT400004315	Potato	mitochondrion	54.97	56.46
CDY10189	Canola	mitochondrion	54.68	54.84
AT1G06270.1	Thale cress	mitochondrion	54.97	54.81
Bra015488.1-P	Field mustard	mitochondrion	53.51	53.51
CDY57815	Canola	mitochondrion	53.51	53.51

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100794804	MapMan:35.1	EMBL:ACUP02007760	EnsemblPlantsGene:GLYMA_12G208100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	UniProt:K7LW53	EnsemblPlants:KRH27010	ProteinID:KRH27010	ProteinID:KRH27010.1
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF925	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233C5C2	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:36764924..36766381

Molecular Weight (calculated)

38087.9 Da

IEP (calculated)

8.530

GRAVY (calculated)

0.171

Length

342 amino acids

Sequence
(BLAST)

001: MVMVAMMHYR FLLCFRPILN RCPLGRSVSS LQNLEQAVRA EVEAKNYIKI PELLISSDAC QISNPFSFFS SFPQNIRVQI VDEMLQSLIP IRPRSKAQLT
101: YSYLLSYTLQ SSHPFPLALA VLQRTLRSGC VPVPQTHVLL SSAWLDQHCL SHSVANILLQ MQSIGYHPDC GTCNYLLSSL CAVDQLEEAV KVLRGMGGAG
201: CIPDSSSYGA VIGAMCRVRK TAKALDLMKQ MVVQYGLTPG QGTLVKLLAA LRANREIWKA VEMIEFLEKE GNSVGFESYE LVIEGCLEKR EYVLAAKVAT
301: GMTERGFIPY IRVRQKIIEG LASIDEWNLA CAVRQRFAAL KS

Best Arabidopsis Sequence Match ( AT1G06270.1 )
(BLAST)

001: MAIRLTHLRK PLAYSRSFDV CIPFFRSISS FEAVEKAIKC AVETKEYLRI PELVVSLKEP YQNSTLFSFL SAFQRHHRIR VIDEILQSFV PVRPRSLPKI
101: VYSSLLTYCL QSSDPLPLSF AILQRTLRSG CLPNPQTHLL LSDAWLERRR GSQSVADIIN EMKLIGYSPD TGTCNYLVSS LCAVDKLDEA IKVVEEMSAA
201: GCIPDVESYG AVINSLCLAR KTTDVVKIVK EMVSKAGISP RKGMLTKVAA ALRANREIWK AIEMIEFVES RDYPVEFESY EVVVEGCLEV REYILAGKVV
301: MRMTDRGFIP YIKVRQKVVE RLINIGEWKL ACTVRQRVSE LRS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g06270 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.