Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 7
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004311 | Potato | cytosol | 33.63 | 100.0 |
| Solyc01g088490.2.1 | Tomato | mitochondrion | 93.99 | 93.99 |
| VIT_12s0028g02610.t01 | Wine grape | mitochondrion | 61.26 | 59.48 |
| KRH27010 | Soybean | endoplasmic reticulum, mitochondrion | 56.46 | 54.97 |
| KRH22320 | Soybean | extracellular, plasma membrane | 42.64 | 52.59 |
| CDY10189 | Canola | mitochondrion | 53.75 | 52.49 |
| Bra015488.1-P | Field mustard | mitochondrion | 53.45 | 52.05 |
| CDY57815 | Canola | mitochondrion | 53.45 | 52.05 |
| AT1G06270.1 | Thale cress | mitochondrion | 53.45 | 51.9 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:102581659 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | UniProt:M0ZN80 | PFAM:PF13041 | EnsemblPlantsGene:PGSC0003DMG400001712 | PGSC:PGSC0003DMG400001712 |
| EnsemblPlants:PGSC0003DMT400004315 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF925 | InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI00029567FD | RefSeq:XP_006354624.1 | SEG:seg | : | : |
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400001712]
Coordinates
chr1:-:68326968..68328443
Molecular Weight (calculated)
37290.5 Da
IEP (calculated)
8.397
GRAVY (calculated)
0.056
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVAKLHFSV RPLCRSFISS ARMLEESIKA VVEDKRYEQI PDILSSSEGF HRSPNPFSFL STFPENTSVK IVDEILQSFT TIRPRYRPQI AYSCLLSYSL
101: QSSNPLPLAL AILQRTLRSG CIPVPQTHLL LSTAWIERRS KSYSVSSILL EMQDIGYAPD CGTCSYLISS LCKVDQIDEA VNVLKGMGRA GCSPDLDCYG
201: SLIDNLSELR MTSAIIKTLN EMVAIFGLSP RKETLVKALA AILANKEIRR AIEVIEFLTN EGVHIGFECY QSVLEGCLES RQFILAGKFV IEMTKRGFIP
301: YIRSRQKVVE GLTSIGEWKL ANAVRQRFAE LRS
101: QSSNPLPLAL AILQRTLRSG CIPVPQTHLL LSTAWIERRS KSYSVSSILL EMQDIGYAPD CGTCSYLISS LCKVDQIDEA VNVLKGMGRA GCSPDLDCYG
201: SLIDNLSELR MTSAIIKTLN EMVAIFGLSP RKETLVKALA AILANKEIRR AIEVIEFLTN EGVHIGFECY QSVLEGCLES RQFILAGKFV IEMTKRGFIP
301: YIRSRQKVVE GLTSIGEWKL ANAVRQRFAE LRS
001: MAIRLTHLRK PLAYSRSFDV CIPFFRSISS FEAVEKAIKC AVETKEYLRI PELVVSLKEP YQNSTLFSFL SAFQRHHRIR VIDEILQSFV PVRPRSLPKI
101: VYSSLLTYCL QSSDPLPLSF AILQRTLRSG CLPNPQTHLL LSDAWLERRR GSQSVADIIN EMKLIGYSPD TGTCNYLVSS LCAVDKLDEA IKVVEEMSAA
201: GCIPDVESYG AVINSLCLAR KTTDVVKIVK EMVSKAGISP RKGMLTKVAA ALRANREIWK AIEMIEFVES RDYPVEFESY EVVVEGCLEV REYILAGKVV
301: MRMTDRGFIP YIKVRQKVVE RLINIGEWKL ACTVRQRVSE LRS
101: VYSSLLTYCL QSSDPLPLSF AILQRTLRSG CLPNPQTHLL LSDAWLERRR GSQSVADIIN EMKLIGYSPD TGTCNYLVSS LCAVDKLDEA IKVVEEMSAA
201: GCIPDVESYG AVINSLCLAR KTTDVVKIVK EMVSKAGISP RKGMLTKVAA ALRANREIWK AIEMIEFVES RDYPVEFESY EVVVEGCLEV REYILAGKVV
301: MRMTDRGFIP YIKVRQKVVE RLINIGEWKL ACTVRQRVSE LRS
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g06270 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC0]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.