CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57815	Canola	mitochondrion	96.77	96.49
AT1G06270.1	Thale cress	mitochondrion	91.2	90.67
PGSC0003DMT400004311	Potato	cytosol	19.65	59.82
VIT_12s0028g02610.t01	Wine grape	mitochondrion	56.3	55.98
KRH27010	Soybean	endoplasmic reticulum, mitochondrion	54.84	54.68
Solyc01g088490.2.1	Tomato	mitochondrion	53.08	54.35
PGSC0003DMT400004315	Potato	mitochondrion	52.49	53.75
KRH22320	Soybean	extracellular, plasma membrane	40.76	51.48

Protein Annotations

EnsemblPlants:CDY10189	EnsemblPlantsGene:GSBRNA2T00032005001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF925
PFAM:PF13041	PFscan:PS51375	ProteinID:CDY10189	ProteinID:CDY10189.1	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0004EE28AC	UniProt:A0A078FAY1	MapMan:35.1	:	:	:

Description

BnaC05g04320DBnaC05g04320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FAY1]

Coordinates

chrLK032001:-:454669..455694

Molecular Weight (calculated)

38698.6 Da

IEP (calculated)

9.175

GRAVY (calculated)

0.008

Length

341 amino acids

Sequence
(BLAST)

001: MAFRLTHLRK PLAYSRSFTP FSRQVSSFEA VEKAIKCAVE TKEYLQIPHL VVSLKEPYQN SKLFSFLSAF HHHHRIRVID EILQSFVPVR PRSLPKIVYS
101: SLLTYCLQSS DPLPLSFAIL QRTLRSGCLP NTQTHLLLSD AWLERRGRGS QSVVEIINEM KLIGYSPDTG TCNYLVSSLC AVDKLDEAVR VVEEMGGAGC
201: IPDIESYGAV INSMCLARKT SDVVKIVKEM VSKAGISPRK GMLTKVVAAL RANREIWKAI EMIEFVESRD YPVEFETYEV LVEGCLEVRE YILAGKMVMR
301: MTDKGFIPYI KVRQKVVERL ISIGEWKLAC TVRQRLAELK S

Best Arabidopsis Sequence Match ( AT1G06270.1 )
(BLAST)

001: MAIRLTHLRK PLAYSRSFDV CIPFFRSISS FEAVEKAIKC AVETKEYLRI PELVVSLKEP YQNSTLFSFL SAFQRHHRIR VIDEILQSFV PVRPRSLPKI
101: VYSSLLTYCL QSSDPLPLSF AILQRTLRSG CLPNPQTHLL LSDAWLERRR GSQSVADIIN EMKLIGYSPD TGTCNYLVSS LCAVDKLDEA IKVVEEMSAA
201: GCIPDVESYG AVINSLCLAR KTTDVVKIVK EMVSKAGISP RKGMLTKVAA ALRANREIWK AIEMIEFVES RDYPVEFESY EVVVEGCLEV REYILAGKVV
301: MRMTDRGFIP YIKVRQKVVE RLINIGEWKL ACTVRQRVSE LRS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g06270 [Source:UniProtKB/Swiss-Prot;Acc:Q9LNC0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.