CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97250
CDY01933
CDY07141

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39400.1	CDX97250	AT4G01480.1	21798944
AT5G39400.1	CDY01933	AT4G01480.1	21798944
AT5G39400.1	CDY07141	AT4G01480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G39400.1	Thale cress	nucleus	92.74	92.96
CDX67428	Canola	nucleus	89.83	89.18
CDY37003	Canola	nucleus	89.83	89.18
Bra028240.1-P	Field mustard	plastid	99.27	85.42
CDY37863	Canola	mitochondrion	96.37	81.56
CDY24016	Canola	extracellular	19.85	79.61
VIT_14s0108g01410.t01	Wine grape	cytosol	34.62	66.82
KRH44965	Soybean	cytosol	66.83	66.19
PGSC0003DMT400059435	Potato	cytosol	60.77	60.63
Solyc03g013310.2.1	Tomato	cytosol	59.08	59.08
CDY70932	Canola	extracellular, golgi	22.28	42.01
CDY22969	Canola	cytosol, mitochondrion	8.23	24.64
CDY65163	Canola	plastid	16.46	17.0
CDY63391	Canola	cytosol	23.49	16.39
CDY46177	Canola	cytosol	23.24	16.27
CDX95448	Canola	cytosol	23.24	16.22
CDY50153	Canola	cytosol	23.0	16.07
CDY23021	Canola	cytosol	22.03	15.66
CDY02094	Canola	cytosol	20.82	15.28

Protein Annotations

MapMan:18.4.23.2.1	Gene3D:2.60.40.1110	Gene3D:3.90.190.10	GO:A0A078CC80	EnsemblPlants:CDX74467	ProteinID:CDX74467
ProteinID:CDX74467.1	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004725	GO:GO:0006464
GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00114346001	InterPro:IPR014020	InterPro:IPR029021	InterPro:IPR029023	PFAM:PF00782
PFAM:PF10409	ScanProsite:PS00383	PFscan:PS51181	PFscan:PS51182	PANTHER:PTHR12305	PANTHER:PTHR12305:SF80
InterPro:Prot-tyrosine_phosphatase-like	SMART:SM01326	SUPFAM:SSF49562	SUPFAM:SSF52799	InterPro:Tensin_C2-dom	InterPro:Tensin_phosphatase
InterPro:Tyr_Pase_AS	UniParc:UPI0004EEB883	:	:	:	:

Description

BnaA04g09220D

Coordinates

chrLK031801:-:516064..517973

Molecular Weight (calculated)

47307.9 Da

IEP (calculated)

8.369

GRAVY (calculated)

-0.328

Length

413 amino acids

Sequence
(BLAST)

001: MGLKLSRGPG KEKSTLQLTR VHILTYLTTS YYLRNLVSKK RRRLITGGYD LDMSYISDKL LAMSFPAERM RAVYRNPLWQ VKSVLDMRHP DHYKIYNLCI
101: EECYDPENFY GRVERFPFDD NHVPSLKMIQ LFCQSVHSWL SLDPKNIAVV HCMAGKGRTG LMVSAYLVYG GMSAEEALEM YASRRTTNNN GVSIPSQRRY
201: VKYWSHLLGE RIGKGPPEVK LPQEHSRELL RIRLYDTANV DSVFFVVSEL QEVPNEMYRP SVELARGCCR QFKKGYCRSS SPRYYISHIN CDSEEDEVLT
301: AGEEPRLVVQ MDTESSIIDE KTCLDFYFDK PVRVSGDIRI TFYQKMIGSR LFYTCFNTAF ITNGLLQFSI GELDKVGGNG RSISGPDFSL ELLFSPATSI
401: SGKLLSRDDL SLS

Best Arabidopsis Sequence Match ( AT5G39400.1 )
(BLAST)

001: MGLKLSRGPV KEKSPLEFTR VHILTYFTTN SYLRNLVSKK RRRLIIGGYD LDMSYISDKL LAMSFPAERM RAVYRNPLWQ VKSVLDMRHP DHYKVYNLCI
101: EESYDPDNFY GRVERFPFDD NHVPSLKMIQ LFCESVHSWL SLDPKNIAVV HCMAGKGRTG LMVSAYLVYG GMSAEEALEM YASRRTTNNN GVSIPSQRRY
201: VKYWSDLLSF SKKGPPEVKL PQEHSRELLR IRLYDTANVD SVFFVVSELQ EVPNEMYRPS VELARGCCRQ FKKGYCRSSS PRYYISHVNC DSEEDEEVTD
301: GEEPHLVVQM DTESSIIDEK TCLDFYFDKP VRVSGDIRIT FYQKMIGSRL FYTCFNTAFI TNGLLQFSIG ELDKVGGNGR SISGPDFSLE LLFGPACSKF
401: GKFLSRDDLS LS

Arabidopsis Description

PTEN1Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.