Factsheet for PGSC0003DMT400059435

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012843
PGSC0003DMT400015012
PGSC0003DMT400031865

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39400.1	PGSC0003DMT400012843	AT4G01480.1	21798944
AT5G39400.1	PGSC0003DMT400015012	AT4G01480.1	21798944
AT5G39400.1	PGSC0003DMT400031865	AT4G01480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g013310.2.1	Tomato	cytosol	91.79	92.01
VIT_14s0108g01410.t01	Wine grape	cytosol	35.02	67.76
CDY24016	Canola	extracellular	15.94	64.08
Bra026263.1-P	Field mustard	nucleus	25.36	64.02
KRH44965	Soybean	cytosol	64.01	63.55
AT5G39400.1	Thale cress	nucleus	60.87	61.16
Bra028431.1-P	Field mustard	nucleus	61.11	60.82
CDX67428	Canola	nucleus	61.11	60.82
CDY37003	Canola	nucleus	61.11	60.82
CDX74467	Canola	cytosol, mitochondrion, nucleus, plastid	60.63	60.77
Bra028240.1-P	Field mustard	plastid	60.39	52.08
CDY37863	Canola	mitochondrion	60.14	51.02
CDY70932	Canola	extracellular, golgi	17.39	32.88
PGSC0003DMT400064308	Potato	cytosol, plastid	23.43	16.11
PGSC0003DMT400066563	Potato	cytosol, plastid	23.67	15.96

Protein Annotations

EntrezGene:102604410	MapMan:18.4.23.2.1	Gene3D:2.60.40.1110	Gene3D:3.90.190.10	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004725	GO:GO:0006464	GO:GO:0006470	GO:GO:0008138	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0019538	GO:GO:0035335
InterPro:IPR014020	InterPro:IPR029021	InterPro:IPR029023	UniProt:M1C488	PFAM:PF00782	PFAM:PF10409
EnsemblPlantsGene:PGSC0003DMG400023092	PGSC:PGSC0003DMG400023092	EnsemblPlants:PGSC0003DMT400059435	ScanProsite:PS00383	PFscan:PS51181	PFscan:PS51182
PANTHER:PTHR12305	PANTHER:PTHR12305:SF80	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM01326	SUPFAM:SSF49562	SUPFAM:SSF52799
InterPro:Tensin_C2-dom	InterPro:Tensin_phosphatase	InterPro:Tyr_Pase_AS	UniParc:UPI000296BA20	RefSeq:XP_006349574.1	:

Description

Pten [Source:PGSC_GENE;Acc:PGSC0003DMG400023092]

Coordinates

chr3:+:24754576..24760252

Molecular Weight (calculated)

47844.7 Da

IEP (calculated)

8.548

GRAVY (calculated)

-0.347

Length

414 amino acids

Sequence
(BLAST)

001: MGVRLSKQGF KRPDTPSISD LHLGLINYLS RSFCIRNLVS KQRRRMLVGG YDLDMTYISD RILAMSFPAE HVRAVFRNPL WQVKSVLDMR HAGHYKVYNL
101: CIEQAYDASH FHGRVERYPI DDNHVPSLDM IKDFCEDVYS WLSSDSKNIV VIHCMAGKGR TGLMVCSYLV YTGMSAEDAL RVYAEKRTIN NEGVSIPSQR
201: RYVKYWENAL SYTKGVPPTV KLPQSCKREL RRIRLYDTIN IESIFFVLSE LQRVPGEKYR PSVEVSKSSC RRIKSGIQRT YSPQYVYSFV EENEDEMKQE
301: KKEPRLVVQM DTESSMLYQK TCLDHFYDIP VQICGDVRII FYEKLIGGRL FYACFNTAFI RNDLLQFSIR ELDKVGKKGR SITGSSFCLE LFFGPANGNC
401: LPTPPLHDDD LSDC

Best Arabidopsis Sequence Match ( AT5G39400.1 )
(BLAST)

001: MGLKLSRGPV KEKSPLEFTR VHILTYFTTN SYLRNLVSKK RRRLIIGGYD LDMSYISDKL LAMSFPAERM RAVYRNPLWQ VKSVLDMRHP DHYKVYNLCI
101: EESYDPDNFY GRVERFPFDD NHVPSLKMIQ LFCESVHSWL SLDPKNIAVV HCMAGKGRTG LMVSAYLVYG GMSAEEALEM YASRRTTNNN GVSIPSQRRY
201: VKYWSDLLSF SKKGPPEVKL PQEHSRELLR IRLYDTANVD SVFFVVSELQ EVPNEMYRPS VELARGCCRQ FKKGYCRSSS PRYYISHVNC DSEEDEEVTD
301: GEEPHLVVQM DTESSIIDEK TCLDFYFDKP VRVSGDIRIT FYQKMIGSRL FYTCFNTAFI TNGLLQFSIG ELDKVGGNGR SISGPDFSLE LLFGPACSKF
401: GKFLSRDDLS LS

Arabidopsis Description

PTEN1Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.