CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX97250
CDY01933
CDY07141

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39400.1	CDX97250	AT4G01480.1	21798944
AT5G39400.1	CDY01933	AT4G01480.1	21798944
AT5G39400.1	CDY07141	AT4G01480.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74467	Canola	cytosol, mitochondrion, nucleus, plastid	81.56	96.37
AT5G39400.1	Thale cress	nucleus	77.46	91.75
Bra028240.1-P	Field mustard	plastid	87.5	88.96
CDY37003	Canola	nucleus	75.61	88.7
CDX67428	Canola	nucleus	75.61	88.7
CDY24016	Canola	extracellular	16.39	77.67
KRH44965	Soybean	cytosol	55.94	65.47
VIT_14s0108g01410.t01	Wine grape	cytosol	28.07	64.02
PGSC0003DMT400059435	Potato	cytosol	51.02	60.14
Solyc03g013310.2.1	Tomato	cytosol	49.59	58.6
CDY70932	Canola	extracellular, golgi	18.44	41.1
CDY22969	Canola	cytosol, mitochondrion	6.56	23.19
CDY65163	Canola	plastid	14.34	17.5
CDY63391	Canola	cytosol	20.49	16.89
CDX95448	Canola	cytosol	20.29	16.72
CDY46177	Canola	cytosol	20.08	16.61
CDY50153	Canola	cytosol	19.88	16.41
CDY23021	Canola	cytosol	19.26	16.18
CDY02094	Canola	cytosol	18.44	15.99

Protein Annotations

MapMan:18.4.23.2.1	Gene3D:2.60.40.1110	Gene3D:3.90.190.10	GO:A0A078HLX8	UniProt:A0A078HLX8	EnsemblPlants:CDY37863
ProteinID:CDY37863	ProteinID:CDY37863.1	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004725
GO:GO:0006464	GO:GO:0006470	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0019538	GO:GO:0035335	EnsemblPlantsGene:GSBRNA2T00064823001	InterPro:IPR014020
InterPro:IPR029021	InterPro:IPR029023	PFAM:PF00782	PFAM:PF10409	ScanProsite:PS00383	PFscan:PS51181
PFscan:PS51182	PANTHER:PTHR12305	PANTHER:PTHR12305:SF80	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM01326	SUPFAM:SSF49562
SUPFAM:SSF52799	SignalP:SignalP-noTM	InterPro:Tensin_C2-dom	InterPro:Tensin_phosphatase	InterPro:Tyr_Pase_AS	UniParc:UPI0004EF0216
SEG:seg	:	:	:	:	:

Description

BnaC04g31430DBnaC04g31430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLX8]

Coordinates

chrLK032410:-:26710..29418

Molecular Weight (calculated)

55916.3 Da

IEP (calculated)

9.192

GRAVY (calculated)

-0.342

Length

488 amino acids

Sequence
(BLAST)

001: MLKIILLLRA SLSSRVPIFQ VKQNSFSPKK NKLKHFPFCF ASRPSSPSSS FSGSHLPSIW EPENRFLNLH DQFFRMGLKL SRGPGKEKST LQLTRVHILT
101: YLTTSYYLRN LVSKKRRRLI AGGYDLDMSY ISDKLLAMSL PAERMRAVYR NPLWQVKSVL DMRHHDHYKI YNLCIEECYD PENFDGRVER FPFDDNHVPS
201: LKMIQRFCQS VRSWLSLDPK NIAVVHCMAG KGRTGLMVSA YLVYGGMSAE EALEMYASRR TTNNNGVSIP SQRRYVKYWS HLLGKGIGNG PPEVRLPQEH
301: SRELLRIRLY DTANVDSVFF VVSELQEVPN EMYRPSVELA KGCCRQFKKG YCRSSSPRYY ISHINCDSEE DEVLTDGEEP RLVVQMDTES SIIDEKTCLD
401: FYFDKPVRVS GDIRITFYQK MIGSRLFYTC FNTAFITNGL LQFSIGELDK VGGNGRSISG PDFSLELLFS PATSISGKLL SRDDLSLS

Best Arabidopsis Sequence Match ( AT5G39400.1 )
(BLAST)

001: MGLKLSRGPV KEKSPLEFTR VHILTYFTTN SYLRNLVSKK RRRLIIGGYD LDMSYISDKL LAMSFPAERM RAVYRNPLWQ VKSVLDMRHP DHYKVYNLCI
101: EESYDPDNFY GRVERFPFDD NHVPSLKMIQ LFCESVHSWL SLDPKNIAVV HCMAGKGRTG LMVSAYLVYG GMSAEEALEM YASRRTTNNN GVSIPSQRRY
201: VKYWSDLLSF SKKGPPEVKL PQEHSRELLR IRLYDTANVD SVFFVVSELQ EVPNEMYRPS VELARGCCRQ FKKGYCRSSS PRYYISHVNC DSEEDEEVTD
301: GEEPHLVVQM DTESSIIDEK TCLDFYFDKP VRVSGDIRIT FYQKMIGSRL FYTCFNTAFI TNGLLQFSIG ELDKVGGNGR SISGPDFSLE LLFGPACSKF
401: GKFLSRDDLS LS

Arabidopsis Description

PTEN1Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and protein-tyrosine-phosphatase PTEN1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLZ5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.