Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 3
- extracellular 2
- vacuole 2
- plasma membrane 3
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0651000-01 | Rice | cytosol | 41.87 | 64.36 |
| TraesCS6B01G283300.1 | Wheat | cytosol | 55.71 | 57.5 |
| TraesCS6D01G223500.2 | Wheat | cytosol | 55.36 | 57.14 |
| TraesCS6A01G241300.1 | Wheat | cytosol | 55.02 | 56.99 |
| VIT_16s0039g02680.t01 | Wine grape | cytosol | 52.94 | 54.06 |
| KXG31106 | Sorghum | cytosol | 52.25 | 53.93 |
| Zm00001d017432_P001 | Maize | cytosol | 51.56 | 51.38 |
| AT5G51170.1 | Thale cress | cytosol | 49.83 | 50.53 |
| KRH75343 | Soybean | cytosol | 48.44 | 50.18 |
| Bra035728.1-P | Field mustard | cytosol | 48.44 | 48.28 |
| CDX71693 | Canola | cytosol | 48.44 | 48.28 |
| CDY68575 | Canola | cytosol | 48.44 | 48.28 |
| Solyc03g093880.2.1 | Tomato | cytosol | 47.4 | 47.74 |
| PGSC0003DMT400021460 | Potato | cytosol, plastid | 47.06 | 47.72 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P29020_001 | EnsemblPlants:GSMUA_Achr10T29020_001 | EnsemblPlantsGene:GSMUA_Achr10G29020_001 | Gene3D:3.90.1140.10 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0034477 | GO:GO:0090305 | InterPro:Usb1 | PANTHER:PTHR13522 | PFAM:PF09749 | SEG:seg |
| UniParc:UPI000296662B | UniProt:M0RMC6 | MapMan:35.2 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G29020_001]
Coordinates
chr10:-:31655092..31658573
Molecular Weight (calculated)
32855.4 Da
IEP (calculated)
9.289
GRAVY (calculated)
0.075
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTRGWSYCL DSGVVYLTLV LEDSTFILSP SVLRMNTLLV FSKRKKLTLL RILLSVFLDF SSTTQGSRIR SFPHVEGNYA LHVYVPVVIP TTMKMPVALF
101: VKRIASLVPG LYAVDIDYPL AELCRDDLKL EQMLLGREFH VSLGRTVPIK VHQIDSIVAM LRQKFQSQRR YRVEFNKWDV FVNDEQTRSF LALEVLGGGL
201: SEITKQIHIV DVIYRLHGLP EFYKNPRPHI SLLWGLGDMS DGLKQGIEEI DRSYKNASLS CGGHIFTCKT SGIECKIGKK TYSICKFLD
101: VKRIASLVPG LYAVDIDYPL AELCRDDLKL EQMLLGREFH VSLGRTVPIK VHQIDSIVAM LRQKFQSQRR YRVEFNKWDV FVNDEQTRSF LALEVLGGGL
201: SEITKQIHIV DVIYRLHGLP EFYKNPRPHI SLLWGLGDMS DGLKQGIEEI DRSYKNASLS CGGHIFTCKT SGIECKIGKK TYSICKFLD
001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
Arabidopsis Description
U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.