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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • peroxisome 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d017432_P001 Maize cytosol 93.57 90.34
Os02t0651000-01 Rice cytosol 55.36 82.45
TraesCS6D01G223500.2 Wheat cytosol 80.0 80.0
TraesCS6A01G241300.1 Wheat cytosol 79.64 79.93
TraesCS6B01G283300.1 Wheat cytosol 79.64 79.64
VIT_16s0039g02680.t01 Wine grape cytosol 57.14 56.54
PGSC0003DMT400021460 Potato cytosol, plastid 55.36 54.39
Solyc03g093880.2.1 Tomato cytosol 55.36 54.01
CDY68575 Canola cytosol 55.0 53.1
Bra035728.1-P Field mustard cytosol 54.64 52.76
CDX71693 Canola cytosol 54.29 52.41
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane 53.93 52.25
AT5G51170.1 Thale cress cytosol 52.14 51.23
KRH75343 Soybean cytosol 50.71 50.9
Protein Annotations
Gene3D:3.90.1140.10MapMan:35.2UniProt:A0A194YSF4GO:GO:0000175GO:GO:0003674GO:GO:0003824
GO:GO:0004518GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006397GO:GO:0008150GO:GO:0008152GO:GO:0008380GO:GO:0009987GO:GO:0016787
GO:GO:0034477GO:GO:0090305GO:GO:0090503GO:GO:1990838EnsemblPlants:KXG31106ProteinID:KXG31106
ProteinID:KXG31106.1HAMAP:MF_03040PFAM:PF09749PANTHER:PTHR13522EnsemblPlantsGene:SORBI_3004G299000UniParc:UPI0007F26427
InterPro:Usb1SEG:seg::::
Description
hypothetical protein
Coordinates
chr4:+:63817541..63823609
Molecular Weight (calculated)
31469.0 Da
IEP (calculated)
7.528
GRAVY (calculated)
-0.204
Length
280 amino acids
Sequence
(BLAST)
001: MDALMASYAS DSDSDGGEPA AVSGGAPEIP EPSALLPPPP LDLLQPPNFA GYSAMAQGGR VRSFPHVEGN YAVHVYIPVV IPSDAMKQLA LSMKRAASLV
101: PDLYAVDADY ALSELCKDEQ KLEKMLLSRE FHVSLGRPVA IQVHQIDSFI AMLRQKFQTQ QRYWMEFNKW EHFVNDDCTR SFLSLEVTRT GLPEIRKQIL
201: MVDEVYRLHG LPEFYTNPRP HISFVWALGD VSSKLKQAIK DIEKYQSSMS SLQKCNVRCK FSRVVCKVGK KVHDICKVAY
Best Arabidopsis Sequence Match ( AT5G51170.1 )
(BLAST)
001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
Arabidopsis Description
U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.