Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- peroxisome 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Zm00001d017432_P001 | Maize | cytosol | 93.57 | 90.34 |
Os02t0651000-01 | Rice | cytosol | 55.36 | 82.45 |
TraesCS6D01G223500.2 | Wheat | cytosol | 80.0 | 80.0 |
TraesCS6A01G241300.1 | Wheat | cytosol | 79.64 | 79.93 |
TraesCS6B01G283300.1 | Wheat | cytosol | 79.64 | 79.64 |
VIT_16s0039g02680.t01 | Wine grape | cytosol | 57.14 | 56.54 |
PGSC0003DMT400021460 | Potato | cytosol, plastid | 55.36 | 54.39 |
Solyc03g093880.2.1 | Tomato | cytosol | 55.36 | 54.01 |
CDY68575 | Canola | cytosol | 55.0 | 53.1 |
Bra035728.1-P | Field mustard | cytosol | 54.64 | 52.76 |
CDX71693 | Canola | cytosol | 54.29 | 52.41 |
GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 53.93 | 52.25 |
AT5G51170.1 | Thale cress | cytosol | 52.14 | 51.23 |
KRH75343 | Soybean | cytosol | 50.71 | 50.9 |
Protein Annotations
Gene3D:3.90.1140.10 | MapMan:35.2 | UniProt:A0A194YSF4 | GO:GO:0000175 | GO:GO:0003674 | GO:GO:0003824 |
GO:GO:0004518 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016787 |
GO:GO:0034477 | GO:GO:0090305 | GO:GO:0090503 | GO:GO:1990838 | EnsemblPlants:KXG31106 | ProteinID:KXG31106 |
ProteinID:KXG31106.1 | HAMAP:MF_03040 | PFAM:PF09749 | PANTHER:PTHR13522 | EnsemblPlantsGene:SORBI_3004G299000 | UniParc:UPI0007F26427 |
InterPro:Usb1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:63817541..63823609
Molecular Weight (calculated)
31469.0 Da
IEP (calculated)
7.528
GRAVY (calculated)
-0.204
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MDALMASYAS DSDSDGGEPA AVSGGAPEIP EPSALLPPPP LDLLQPPNFA GYSAMAQGGR VRSFPHVEGN YAVHVYIPVV IPSDAMKQLA LSMKRAASLV
101: PDLYAVDADY ALSELCKDEQ KLEKMLLSRE FHVSLGRPVA IQVHQIDSFI AMLRQKFQTQ QRYWMEFNKW EHFVNDDCTR SFLSLEVTRT GLPEIRKQIL
201: MVDEVYRLHG LPEFYTNPRP HISFVWALGD VSSKLKQAIK DIEKYQSSMS SLQKCNVRCK FSRVVCKVGK KVHDICKVAY
101: PDLYAVDADY ALSELCKDEQ KLEKMLLSRE FHVSLGRPVA IQVHQIDSFI AMLRQKFQTQ QRYWMEFNKW EHFVNDDCTR SFLSLEVTRT GLPEIRKQIL
201: MVDEVYRLHG LPEFYTNPRP HISFVWALGD VSSKLKQAIK DIEKYQSSMS SLQKCNVRCK FSRVVCKVGK KVHDICKVAY
001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
Arabidopsis Description
U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.