CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035728.1-P	Field mustard	cytosol	98.97	98.97
CDX71693	Canola	cytosol	96.9	96.9
AT5G51170.1	Thale cress	cytosol	82.76	84.21
VIT_16s0039g02680.t01	Wine grape	cytosol	64.14	65.72
Os02t0651000-01	Rice	cytosol	38.28	59.04
PGSC0003DMT400021460	Potato	cytosol, plastid	57.93	58.95
KRH75343	Soybean	cytosol	56.55	58.78
TraesCS6A01G241300.1	Wheat	cytosol	55.17	57.35
Solyc03g093880.2.1	Tomato	cytosol	56.21	56.79
TraesCS6B01G283300.1	Wheat	cytosol	54.48	56.43
TraesCS6D01G223500.2	Wheat	cytosol	54.48	56.43
KXG31106	Sorghum	cytosol	53.1	55.0
Zm00001d017432_P001	Maize	cytosol	52.07	52.07
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	48.28	48.44

Protein Annotations

Gene3D:3.90.1140.10	MapMan:35.2	GO:A0A078JQ46	UniProt:A0A078JQ46	EnsemblPlants:CDY68575	ProteinID:CDY68575
ProteinID:CDY68575.1	GO:GO:0000175	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0016787	GO:GO:0034477	GO:GO:0090305
GO:GO:0090503	GO:GO:1990838	EnsemblPlantsGene:GSBRNA2T00075951001	HAMAP:MF_03040	PFAM:PF09749	PANTHER:PTHR13522
UniParc:UPI0004EF3D76	InterPro:Usb1	SEG:seg	:	:	:

Description

BnaAnng27680DU6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A078JQ46]

Coordinates

chrLK037588:+:3732..5385

Molecular Weight (calculated)

32316.8 Da

IEP (calculated)

7.375

GRAVY (calculated)

-0.259

Length

290 amino acids

Sequence
(BLAST)

001: MDALRASYGD SSSDSDTDEL SPAAENPGEV PTSGKQGKES ISLPPPPLSL LESIGSTGSL DVYSTETVTR VRNFPHVHGN YALHVYIPVF IPLLAKKEIA
101: CVLKRVASLV PHLHLVEADI PLNILCNDDQ KLDHALGREF HISLGRSVPL RVHQINSLVS MLRQKLQLHK RYWMDFNKWE VFVNDDSTRS FLSLEITTSG
201: LSEISKQIDA VNEVYKLHNL PEFYKDPRPH ISLVWALGDI RTSLKGAVDG ELKKLRAGGC VQNRIFTSKF SGIECKIGNK THKICKLPDE

Best Arabidopsis Sequence Match ( AT5G51170.1 )
(BLAST)

001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE

Arabidopsis Description

U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.