Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG31106 | Sorghum | cytosol | 90.34 | 93.57 |
| Os02t0651000-01 | Rice | cytosol | 52.76 | 81.38 |
| TraesCS6D01G223500.2 | Wheat | cytosol | 77.24 | 80.0 |
| TraesCS6B01G283300.1 | Wheat | cytosol | 76.9 | 79.64 |
| TraesCS6A01G241300.1 | Wheat | cytosol | 76.55 | 79.57 |
| VIT_16s0039g02680.t01 | Wine grape | cytosol | 54.83 | 56.18 |
| Solyc03g093880.2.1 | Tomato | cytosol | 53.79 | 54.36 |
| PGSC0003DMT400021460 | Potato | cytosol, plastid | 53.1 | 54.04 |
| CDY68575 | Canola | cytosol | 52.07 | 52.07 |
| KRH75343 | Soybean | cytosol | 50.0 | 51.97 |
| Bra035728.1-P | Field mustard | cytosol | 51.72 | 51.72 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 51.38 | 51.56 |
| CDX71693 | Canola | cytosol | 51.38 | 51.38 |
| AT5G51170.1 | Thale cress | cytosol | 50.0 | 50.88 |
Protein Annotations
| Gene3D:3.90.1140.10 | MapMan:35.2 | UniProt:A0A1D6HET6 | ProteinID:AQK73156.1 | GO:GO:0000175 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0034477 | GO:GO:0090305 | GO:GO:0090503 | GO:GO:1990838 | HAMAP:MF_03040 |
| PFAM:PF09749 | PANTHER:PTHR13522 | UniParc:UPI00084493A8 | InterPro:Usb1 | EnsemblPlantsGene:Zm00001d017432 | EnsemblPlants:Zm00001d017432_P001 |
| EnsemblPlants:Zm00001d017432_T001 | SEG:seg | : | : | : | : |
Description
U6 biogenesis like1 U6 biogenesis like1
Coordinates
chr5:-:195844968..195847238
Molecular Weight (calculated)
32515.1 Da
IEP (calculated)
6.935
GRAVY (calculated)
-0.189
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MDALMASYAS DTDSDGGESA SVSGGAPEVP EPSALLPPPP LDLLQPPNFV DYSAMAQGGR VRSFPHVEGN YAVHVYIPVV IPSDARKQLA LSMKRAASLV
101: PDLYAVDADY ALSELCKDEQ KLEKVLLSRE FHVSLGRPVA VQVHQIDSFI AMLRQKFQPQ QQLVISKNFT AWYWMEFNKW EHFVNDDCTR SFVSLEVTRT
201: GLPEITRQIL MVDEVYRLHG LPEFYTNPRP HISLVWALGD VSGKLKQALK DIEKYQSSMS SLQKCNVRCK FSRVVCKVGK KVHDICKVAD
101: PDLYAVDADY ALSELCKDEQ KLEKVLLSRE FHVSLGRPVA VQVHQIDSFI AMLRQKFQPQ QQLVISKNFT AWYWMEFNKW EHFVNDDCTR SFVSLEVTRT
201: GLPEITRQIL MVDEVYRLHG LPEFYTNPRP HISLVWALGD VSGKLKQALK DIEKYQSSMS SLQKCNVRCK FSRVVCKVGK KVHDICKVAD
001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
Arabidopsis Description
U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.