Factsheet for VIT_16s0039g02680.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75343	Soybean	cytosol	65.37	66.31
AT5G51170.1	Thale cress	cytosol	65.37	64.91
PGSC0003DMT400021460	Potato	cytosol, plastid	64.66	64.21
Bra035728.1-P	Field mustard	cytosol	65.72	64.14
CDY68575	Canola	cytosol	65.72	64.14
CDX71693	Canola	cytosol	65.37	63.79
Solyc03g093880.2.1	Tomato	cytosol	64.31	63.41
KXG31106	Sorghum	cytosol	56.54	57.14
TraesCS6A01G241300.1	Wheat	cytosol	56.18	56.99
Os02t0651000-01	Rice	cytosol	37.81	56.91
TraesCS6B01G283300.1	Wheat	cytosol	55.83	56.43
TraesCS6D01G223500.2	Wheat	cytosol	55.83	56.43
Zm00001d017432_P001	Maize	cytosol	56.18	54.83
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	54.06	52.94

Protein Annotations

EntrezGene:100245880	wikigene:100245880	Gene3D:3.90.1140.10	MapMan:35.2	UniProt:A5BG02	EMBL:AM458237
ProteinID:CAN70131	ProteinID:CAN70131.1	ProteinID:CBI26579	ProteinID:CBI26579.3	EMBL:FN595750	GO:GO:0000175
GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	GO:GO:0016787	GO:GO:0034477	GO:GO:0090305	GO:GO:0090503	GO:GO:1990838
EntrezGene:LOC100245880	wikigene:LOC100245880	HAMAP:MF_03040	PFAM:PF09749	PANTHER:PTHR13522	UniParc:UPI0001520E8B
InterPro:Usb1	ArrayExpress:VIT_16s0039g02680	EnsemblPlantsGene:VIT_16s0039g02680	EnsemblPlants:VIT_16s0039g02680.t01	RefSeq:XP_002278790	RefSeq:XP_002278790.1
SEG:seg	:	:	:	:	:

Description

U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A5BG02]

Coordinates

chr16:+:3057352..3063054

Molecular Weight (calculated)

32126.5 Da

IEP (calculated)

7.933

GRAVY (calculated)

-0.347

Length

283 amino acids

Sequence
(BLAST)

001: MDALRASYAN SCSDSESDSD TPRPTNENHQ ASGPLPPPPL ALLSPPNSLG ELNYSQTAQS GRVRSFPHVE GNYALHVFIP VYIPSSPKKE LVQYLKKVMS
101: LVPGLHVVDV DIPLNILCKD DNKLEQVALG REFHISLGRT VPIRVHQIDS IVTMLRQKLQ FQRRYWIDFN KWEVFVNDDQ TRSFLSVEVI AGGLAEITRQ
201: IQAVNEVYRL HNLPEFYEDP RPHISLVWAL GNISDSLKRA VEEMRRHINV GGSVQKRIFT CKFNGIECKI GNKTYKICKF SED

Best Arabidopsis Sequence Match ( AT5G51170.1 )
(BLAST)

001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE

Arabidopsis Description

U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.