CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68575	Canola	cytosol	96.9	96.9
AT5G51170.1	Thale cress	cytosol	83.45	84.91
VIT_16s0039g02680.t01	Wine grape	cytosol	63.79	65.37
PGSC0003DMT400021460	Potato	cytosol, plastid	57.93	58.95
KRH75343	Soybean	cytosol	56.55	58.78
Os02t0651000-01	Rice	cytosol	37.93	58.51
Solyc03g093880.2.1	Tomato	cytosol	56.21	56.79
TraesCS6A01G241300.1	Wheat	cytosol	54.48	56.63
TraesCS6B01G283300.1	Wheat	cytosol	53.79	55.71
TraesCS6D01G223500.2	Wheat	cytosol	53.79	55.71
KXG31106	Sorghum	cytosol	52.41	54.29
Zm00001d017432_P001	Maize	cytosol	51.38	51.38
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	48.28	48.44

Protein Annotations

EnsemblPlants:CDX71693	EnsemblPlantsGene:GSBRNA2T00152372001	Gene3D:3.90.1140.10	GO:A0A078C9K9	GO:GO:0003674	GO:GO:0003824
GO:GO:0004518	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787
GO:GO:0034477	HAMAP:MF_03040	InterPro:Usb1	PANTHER:PTHR13522	PFAM:PF09749	ProteinID:CDX71693
ProteinID:CDX71693.1	SEG:seg	UniParc:UPI0004EF0957	MapMan:35.2	:	:

Description

BnaC09g27340D

Coordinates

chrLK031794:-:3113900..3115737

Molecular Weight (calculated)

32272.7 Da

IEP (calculated)

7.975

GRAVY (calculated)

-0.244

Length

290 amino acids

Sequence
(BLAST)

001: MDALRASYGD SSSDSDTDDL SPAAENHGEV STSGKHGKES ISLPPPPLSL LESIGSTGSL DVYSTKTVTR VRNFPHVDGN YALHVYIPVF IPLLAKKEIA
101: CVLKRVASLV PHLHLVEADI PLSILCNDDQ KLDHALGREF HISLGRSVPL RVHQINSLVS MLRQKLQLHK RYWIDFNKWQ VFVNDDSTRS FLSLEITTSG
201: LSEISKQIDA VNEVYKLHNL PEFYKDPRPH ISLVWALGDI RTSLKGAVDG ELKKLRAGGC VQNRIFTSKF SGIECKIGNK THKICKLPDE

Best Arabidopsis Sequence Match ( AT5G51170.1 )
(BLAST)

001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE

Arabidopsis Description

U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.