Factsheet for AT5G51170.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71693	Canola	cytosol	84.91	83.45
Bra035728.1-P	Field mustard	cytosol	84.21	82.76
CDY68575	Canola	cytosol	84.21	82.76
VIT_16s0039g02680.t01	Wine grape	cytosol	64.91	65.37
KRH75343	Soybean	cytosol	58.95	60.22
PGSC0003DMT400021460	Potato	cytosol, plastid	60.0	60.0
Solyc03g093880.2.1	Tomato	cytosol	58.6	58.19
Os02t0651000-01	Rice	cytosol	37.54	56.91
TraesCS6A01G241300.1	Wheat	cytosol	52.28	53.41
TraesCS6B01G283300.1	Wheat	cytosol	51.58	52.5
TraesCS6D01G223500.2	Wheat	cytosol	51.58	52.5
KXG31106	Sorghum	cytosol	51.23	52.14
Zm00001d017432_P001	Maize	cytosol	50.88	50.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	50.53	49.83

Protein Annotations

Gene3D:3.90.1140.10	MapMan:35.2	EntrezGene:835191	UniProt:A0A178URF1	ProteinID:AED96046.1	ArrayExpress:AT5G51170
EnsemblPlantsGene:AT5G51170	RefSeq:AT5G51170	TAIR:AT5G51170	RefSeq:AT5G51170-TAIR-G	EnsemblPlants:AT5G51170.1	TAIR:AT5G51170.1
EMBL:AY088702	Unigene:At.29692	ProteinID:BAA97379.1	EMBL:BT004333	EMBL:BT005590	GO:GO:0000175
GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	GO:GO:0016787	GO:GO:0034477	GO:GO:0090305	GO:GO:0090503	GO:GO:1990838
HAMAP:MF_03040	RefSeq:NP_568753.1	ProteinID:OAO95917.1	PFAM:PF09749	PO:PO:0000013	PO:PO:0000037
PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR13522	UniProt:Q9LU57	UniParc:UPI000000C347	InterPro:Usb1
SEG:seg	:	:	:	:	:

Description

U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]

Coordinates

chr5:-:20793794..20795399

Molecular Weight (calculated)

31856.4 Da

IEP (calculated)

7.553

GRAVY (calculated)

-0.180

Length

285 amino acids

Sequence
(BLAST)

001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.