Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G241300.1 | Wheat | cytosol | 84.57 | 56.99 |
| TraesCS6B01G283300.1 | Wheat | cytosol | 84.57 | 56.79 |
| TraesCS6D01G223500.2 | Wheat | cytosol | 84.57 | 56.79 |
| KXG31106 | Sorghum | cytosol | 82.45 | 55.36 |
| Zm00001d017432_P001 | Maize | cytosol | 81.38 | 52.76 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 64.36 | 41.87 |
| Bra035728.1-P | Field mustard | cytosol | 59.04 | 38.28 |
| CDY68575 | Canola | cytosol | 59.04 | 38.28 |
| CDX71693 | Canola | cytosol | 58.51 | 37.93 |
| VIT_16s0039g02680.t01 | Wine grape | cytosol | 56.91 | 37.81 |
| AT5G51170.1 | Thale cress | cytosol | 56.91 | 37.54 |
| KRH75343 | Soybean | cytosol | 55.32 | 37.28 |
| Solyc03g093880.2.1 | Tomato | cytosol | 54.79 | 35.89 |
| PGSC0003DMT400021460 | Potato | cytosol, plastid | 53.72 | 35.44 |
Protein Annotations
| Gene3D:3.90.1140.10 | MapMan:35.2 | ProteinID:BAF09504.1 | ProteinID:BAS80055.1 | GO:GO:0000175 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0034477 |
| GO:GO:0090305 | GO:GO:0090503 | GO:GO:1990838 | EnsemblPlantsGene:Os02g0651000 | EnsemblPlants:Os02t0651000-01 | PFAM:PF09749 |
| PANTHER:PTHR13522 | UniProt:Q0DZ34 | UniParc:UPI0000DF07D9 | InterPro:Usb1 | : | : |
Description
Uncharacterised protein family UPF0406 domain containing protein. (Os02t0651000-01)
Coordinates
chr2:-:26243702..26244999
Molecular Weight (calculated)
21688.2 Da
IEP (calculated)
8.583
GRAVY (calculated)
-0.271
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRAASFVPD LYAIDADYAL SELCKDEQKL EKVLLSREFH VSLGRTVAIQ VHQIESLVAM LRQKFRSQQR YWMDFNKWEH FVNDDCTRSF LSLEVTSTGL
101: PEISKQITMV DDVYRLHGLP EFYKNPRPHI SLAWALGDVS CKLKQAIKEI EKSQSSLGTS QISNLRCKFS HVVCKIGKKV YDICKLAD
101: PEISKQITMV DDVYRLHGLP EFYKNPRPHI SLAWALGDVS CKLKQAIKEI EKSQSSLGTS QISNLRCKFS HVVCKIGKKV YDICKLAD
001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
Arabidopsis Description
U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.