Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G283300.1 | Wheat | cytosol | 99.29 | 99.29 |
| TraesCS6A01G241300.1 | Wheat | cytosol | 97.86 | 98.21 |
| Os02t0651000-01 | Rice | cytosol | 56.79 | 84.57 |
| KXG31106 | Sorghum | cytosol | 80.0 | 80.0 |
| Zm00001d017432_P001 | Maize | cytosol | 80.0 | 77.24 |
| VIT_16s0039g02680.t01 | Wine grape | cytosol | 56.43 | 55.83 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 57.14 | 55.36 |
| CDY68575 | Canola | cytosol | 56.43 | 54.48 |
| Bra035728.1-P | Field mustard | cytosol | 56.07 | 54.14 |
| KRH75343 | Soybean | cytosol | 53.93 | 54.12 |
| CDX71693 | Canola | cytosol | 55.71 | 53.79 |
| Solyc03g093880.2.1 | Tomato | cytosol | 54.29 | 52.96 |
| PGSC0003DMT400021460 | Potato | cytosol, plastid | 53.57 | 52.63 |
| AT5G51170.1 | Thale cress | cytosol | 52.5 | 51.58 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G223500.2 | EnsemblPlantsGene:TraesCS6D01G223500 | Gene3D:3.90.1140.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0034477 |
| HAMAP:MF_03040 | InterPro:Usb1 | ncoils:Coil | PANTHER:PTHR13522 | PFAM:PF09749 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:315623715..315625708
Molecular Weight (calculated)
31751.1 Da
IEP (calculated)
6.942
GRAVY (calculated)
-0.313
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MDALMANYGS DSDDDNEPAT VAGGAPEPQE ASVLLPPPPL DLLQPPNFVD YSTIAQGSRI RSFPHVEGNY ALHVYIPVVI PFNARKQLTL VMRRAASLVP
101: DLYAVDADYA LSELCKDEQK LEKVLLGREF HVSLGRTVGI QVHQIDSLVA MLRQKFQSQQ RRYWMEFNKW EHFVNDDSTR SFLSLEVTRT GLPEISKQIH
201: MVDEVYRLHG LPEFYKNPRP HISLAWALGD VSSKLKQATK EIEKFENSII SSKNCNLRCN FSRIVCKVGK KVYDICKIGD
101: DLYAVDADYA LSELCKDEQK LEKVLLGREF HVSLGRTVGI QVHQIDSLVA MLRQKFQSQQ RRYWMEFNKW EHFVNDDSTR SFLSLEVTRT GLPEISKQIH
201: MVDEVYRLHG LPEFYKNPRP HISLAWALGD VSSKLKQATK EIEKFENSII SSKNCNLRCN FSRIVCKVGK KVYDICKIGD
001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
Arabidopsis Description
U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.