CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g02680.t01	Wine grape	cytosol	66.31	65.37
PGSC0003DMT400021460	Potato	cytosol, plastid	60.93	59.65
AT5G51170.1	Thale cress	cytosol	60.22	58.95
Solyc03g093880.2.1	Tomato	cytosol	59.5	57.84
Bra035728.1-P	Field mustard	cytosol	58.78	56.55
CDX71693	Canola	cytosol	58.78	56.55
CDY68575	Canola	cytosol	58.78	56.55
Os02t0651000-01	Rice	cytosol	37.28	55.32
TraesCS6A01G241300.1	Wheat	cytosol	54.48	54.48
TraesCS6B01G283300.1	Wheat	cytosol	54.12	53.93
TraesCS6D01G223500.2	Wheat	cytosol	54.12	53.93
KXG31106	Sorghum	cytosol	50.9	50.71
Zm00001d017432_P001	Maize	cytosol	51.97	50.0
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	50.18	48.44

Protein Annotations

EntrezGene:100804441	Gene3D:3.90.1140.10	MapMan:35.2	EMBL:ACUP02000298	EnsemblPlantsGene:GLYMA_01G079300	GO:GO:0000175
GO:GO:0003674	GO:GO:0003824	GO:GO:0004518	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006397	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009987	GO:GO:0016787	GO:GO:0034477	GO:GO:0090305	GO:GO:0090503	GO:GO:1990838
UniProt:I1J6I2	ProteinID:KRH75341.1	ProteinID:KRH75342.1	EnsemblPlants:KRH75343	ProteinID:KRH75343	ProteinID:KRH75343.1
ProteinID:KRH75344.1	ProteinID:KRH75345.1	HAMAP:MF_03040	PFAM:PF09749	PANTHER:PTHR13522	UniParc:UPI0002336FC3
InterPro:Usb1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:20705710..20713529

Molecular Weight (calculated)

31348.9 Da

IEP (calculated)

7.883

GRAVY (calculated)

-0.169

Length

279 amino acids

Sequence
(BLAST)

001: MEALKASYGD GSSDSDSESA HSIPTSAPSA VFTPLPPPPI SLLDPPSILD LQIGQTTRLR SFPHVDGNYA LHVYIPIYIS SPSKKELVAF LKKISSREPR
101: LNVVDVDVPL NILCQNDEKL EQVTLGREFH ISLGRTVPIR VHQIDSVVSM LRQKLQIQHQ YWIDFNKWEV FVNDDHTRSF LSAEVVQGGL VEITKQIEVV
201: NAIYRLHNLP EFYKDPRPHI SLAWALGDIA HSLKKIVDEE MKCAVGKSLK KCIFSCKFKS IECKIGKKAY TICKISDGQ

Best Arabidopsis Sequence Match ( AT5G51170.1 )
(BLAST)

001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE

Arabidopsis Description

U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.