Factsheet for Solyc03g093880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021460	Potato	cytosol, plastid	93.73	94.39
VIT_16s0039g02680.t01	Wine grape	cytosol	63.41	64.31
KRH75343	Soybean	cytosol	57.84	59.5
AT5G51170.1	Thale cress	cytosol	58.19	58.6
CDX71693	Canola	cytosol	56.79	56.21
CDY68575	Canola	cytosol	56.79	56.21
Bra035728.1-P	Field mustard	cytosol	56.45	55.86
KXG31106	Sorghum	cytosol	54.01	55.36
TraesCS6A01G241300.1	Wheat	cytosol	53.31	54.84
Os02t0651000-01	Rice	cytosol	35.89	54.79
TraesCS6B01G283300.1	Wheat	cytosol	52.96	54.29
TraesCS6D01G223500.2	Wheat	cytosol	52.96	54.29
Zm00001d017432_P001	Maize	cytosol	54.36	53.79
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	47.74	47.4

Protein Annotations

Gene3D:3.90.1140.10	MapMan:35.2	GO:GO:0000175	GO:GO:0003674	GO:GO:0003824	GO:GO:0004518
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006397
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	GO:GO:0016787	GO:GO:0034477
GO:GO:0090305	GO:GO:0090503	GO:GO:1990838	UniProt:K4BIR4	HAMAP:MF_03040	PFAM:PF09749
PANTHER:PTHR13522	EnsemblPlantsGene:Solyc03g093880.2	EnsemblPlants:Solyc03g093880.2.1	UniParc:UPI0002767661	InterPro:Usb1	SEG:seg

Description

U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:K4BIR4]

Coordinates

chr3:+:55542711..55547332

Molecular Weight (calculated)

32317.9 Da

IEP (calculated)

7.196

GRAVY (calculated)

-0.243

Length

287 amino acids

Sequence
(BLAST)

001: MEALLASYAD DSSDTGSDSD SNPTPPQPPS ASTSLAPLPP PPISLLQPPN SLVPSDSLPS SQVNRVRSFP HIEGNYALHV YIPVYIPSAT RKGLVRFLKK
101: VTAIVPTLYA VDVDVPLSGL LKDEALLEKV VLDREFHISL GRTVPLRVHQ INSVVSMLRQ RLQFQRRYLI DFNKWEIFVN DDSTRTFMSL EVLEGGLAQI
201: RRQIQAVDEV YKLHNLPEFY KDPRPHISIT WALGDISDTL KRMAEEEMIK YKAGPSSRQN CIFTSKFSGI LCKIGNKMHE ICKFQEE

Best Arabidopsis Sequence Match ( AT5G51170.1 )
(BLAST)

001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE

Arabidopsis Description

U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.