Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g093880.2.1 | Tomato | cytosol | 94.39 | 93.73 |
| VIT_16s0039g02680.t01 | Wine grape | cytosol | 64.21 | 64.66 |
| KRH75343 | Soybean | cytosol | 59.65 | 60.93 |
| AT5G51170.1 | Thale cress | cytosol | 60.0 | 60.0 |
| CDX71693 | Canola | cytosol | 58.95 | 57.93 |
| CDY68575 | Canola | cytosol | 58.95 | 57.93 |
| Bra035728.1-P | Field mustard | cytosol | 58.6 | 57.59 |
| KXG31106 | Sorghum | cytosol | 54.39 | 55.36 |
| TraesCS6A01G241300.1 | Wheat | cytosol | 52.98 | 54.12 |
| Os02t0651000-01 | Rice | cytosol | 35.44 | 53.72 |
| TraesCS6B01G283300.1 | Wheat | cytosol | 52.63 | 53.57 |
| TraesCS6D01G223500.2 | Wheat | cytosol | 52.63 | 53.57 |
| Zm00001d017432_P001 | Maize | cytosol | 54.04 | 53.1 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 47.72 | 47.06 |
Protein Annotations
| EntrezGene:102601305 | Gene3D:3.90.1140.10 | MapMan:35.2 | GO:GO:0000175 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0034477 | GO:GO:0090305 | GO:GO:0090503 | GO:GO:1990838 | UniProt:M1AF59 | HAMAP:MF_03040 |
| PFAM:PF09749 | EnsemblPlantsGene:PGSC0003DMG400008328 | PGSC:PGSC0003DMG400008328 | EnsemblPlants:PGSC0003DMT400021460 | PANTHER:PTHR13522 | UniParc:UPI000294FFE2 |
| InterPro:Usb1 | RefSeq:XP_006358197.1 | SEG:seg | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400008328]
Coordinates
chr3:-:37074355..37080225
Molecular Weight (calculated)
32154.9 Da
IEP (calculated)
8.452
GRAVY (calculated)
-0.237
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MEALIASYAD DSSDSDSDSN PTPPQPPSAS TSLAPLPPPP ISLLQPPNSF VPLDSLPSSQ VNRVRSFPHI EGNYALHVYI PVYIPSATRK GLASFLKKVT
101: AIVPTLHAVD VDVPLSGLLK DEALLEKVVL GREFHISLGR TVPLRVHQIN SVVSMLRQRL QFQRRYLIDF NKWEIFVNDD STRTFMSLEV VEGGLAQIRK
201: QIQAVDEVYK LHNLPEFYKD PRPHISITWA LGDIRDTLKR MVEEEMKKYK VGSSSRQKCI FTSKFTGILC KIGNKMHEIC KFQEE
101: AIVPTLHAVD VDVPLSGLLK DEALLEKVVL GREFHISLGR TVPLRVHQIN SVVSMLRQRL QFQRRYLIDF NKWEIFVNDD STRTFMSLEV VEGGLAQIRK
201: QIQAVDEVYK LHNLPEFYKD PRPHISITWA LGDIRDTLKR MVEEEMKKYK VGSSSRQKCI FTSKFTGILC KIGNKMHEIC KFQEE
001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
Arabidopsis Description
U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.