Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68575 | Canola | cytosol | 98.97 | 98.97 |
| AT5G51170.1 | Thale cress | cytosol | 82.76 | 84.21 |
| VIT_16s0039g02680.t01 | Wine grape | cytosol | 64.14 | 65.72 |
| Os02t0651000-01 | Rice | cytosol | 38.28 | 59.04 |
| KRH75343 | Soybean | cytosol | 56.55 | 58.78 |
| PGSC0003DMT400021460 | Potato | cytosol, plastid | 57.59 | 58.6 |
| TraesCS6A01G241300.1 | Wheat | cytosol | 54.83 | 56.99 |
| Solyc03g093880.2.1 | Tomato | cytosol | 55.86 | 56.45 |
| TraesCS6B01G283300.1 | Wheat | cytosol | 54.14 | 56.07 |
| TraesCS6D01G223500.2 | Wheat | cytosol | 54.14 | 56.07 |
| KXG31106 | Sorghum | cytosol | 52.76 | 54.64 |
| Zm00001d017432_P001 | Maize | cytosol | 51.72 | 51.72 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 48.28 | 48.44 |
Protein Annotations
| Gene3D:3.90.1140.10 | MapMan:35.2 | EnsemblPlantsGene:Bra035728 | EnsemblPlants:Bra035728.1 | EnsemblPlants:Bra035728.1-P | GO:GO:0000175 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0034477 | GO:GO:0090305 | GO:GO:0090503 | GO:GO:1990838 |
| UniProt:M4F3S8 | HAMAP:MF_03040 | PFAM:PF09749 | PANTHER:PTHR13522 | UniParc:UPI0002543C6A | InterPro:Usb1 |
| SEG:seg | : | : | : | : | : |
Description
AT5G51170 (E=7e-119) | unknown protein
Coordinates
chrA04:+:12497787..12499845
Molecular Weight (calculated)
32355.8 Da
IEP (calculated)
7.432
GRAVY (calculated)
-0.260
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MDALRASYGD SSSDSDTDEL SPAAENHGEV STSGKHGKES ISLPPPPLSL LESIGSTGSL DVYSTETVTR VRNFPHVHGN YALHVYIPVF IPLLAKKEIA
101: CVLKRVASLV PHLHLVEADI PLNILCNDDQ KLDHALGREF HISLGRSVPL RVHQINSLVS MLRQKLQLHK RYWMDFNKWE VFVNDDSTRS FLSLEITTSG
201: LSEISKQIDA VNEVYKLHNL PEFYKDPRPH ISLVWALGDI RTSLKGAVDG ELKKLRAGGC VQNRIFTSKF SGIECKIGNK THKICKLPDE
101: CVLKRVASLV PHLHLVEADI PLNILCNDDQ KLDHALGREF HISLGRSVPL RVHQINSLVS MLRQKLQLHK RYWMDFNKWE VFVNDDSTRS FLSLEITTSG
201: LSEISKQIDA VNEVYKLHNL PEFYKDPRPH ISLVWALGDI RTSLKGAVDG ELKKLRAGGC VQNRIFTSKF SGIECKIGNK THKICKLPDE
001: MEALRASYGD SSSDSDTDDL SPASPVTANS GEKDSISLPP PPLALLDSIV STGSLDFFST EPGVRVRNFP HVDGNYALHV YVPVCIPPLP KKEIVCFLKK
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
101: VASVVPHLHL VEADVPLSIL CKDDQKFERA LGREFHISLG RNVPLRVHQI NSVISMLRQK LQLQKRYLID FNKWEVFVND DHTRSFLSLE ITTSGLSEIS
201: KQIDAVNEVY KLHNLPEFYK DPRPHISLVW ALGDIRTSLK GAVDVELRKL RAGGCVQNRI FTSKFCGIEC KIGNKTHKIC KLPDE
Arabidopsis Description
U6 snRNA phosphodiesterase [Source:UniProtKB/TrEMBL;Acc:A0A178URF1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.