Factsheet for GSMUA_Achr9P11860_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P22740_001
GSMUA_Achr4P17470_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27130.1	GSMUA_Achr1P22740_001	AT5G35750.1	18642946
AT4G27130.1	GSMUA_Achr4P17470_001	AT5G35750.1	18642946
AT4G27130.1	GSMUA_AchrUn_...	AT5G35750.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P14050_001	Banana	cytosol	93.81	93.81
Solyc07g064150.2.1	Tomato	cytosol	92.92	92.92
GSMUA_Achr4P24000_001	Banana	cytosol	92.92	92.92
PGSC0003DMT400049575	Potato	cytosol	92.92	92.92
GSMUA_Achr1P14620_001	Banana	cytosol, peroxisome, plastid	92.04	92.04
KRH25862	Soybean	cytosol	92.04	92.04
KRH55654	Soybean	cytosol	91.15	91.15
KRH55655	Soybean	cytosol	91.15	91.15
VIT_12s0059g02370.t01	Wine grape	cytosol	91.15	91.15
Solyc10g006470.2.1	Tomato	cytosol	90.27	90.27
GSMUA_Achr8P07330_001	Banana	cytosol, peroxisome, plastid	89.38	89.38
PGSC0003DMT400065815	Potato	cytosol	89.38	89.38
PGSC0003DMT400037400	Potato	cytosol	88.5	88.5
KRH25407	Soybean	cytosol, peroxisome, plastid	87.61	87.61
AT1G54290.1	Thale cress	cytosol, peroxisome, plastid	87.61	87.61
Solyc03g031810.2.1	Tomato	cytosol	87.61	87.61
TraesCS1B01G329300.1	Wheat	cytosol	88.5	86.96
TraesCS1D01G316900.1	Wheat	cytosol	88.5	86.96
TraesCS1A01G316900.1	Wheat	cytosol	88.5	86.96
EES18447	Sorghum	cytosol	88.5	86.96
AT4G27130.1	Thale cress	cytosol, peroxisome, plastid	86.73	86.73
CDY14282	Canola	cytosol, peroxisome, plastid	86.73	86.73
Bra026376.1-P	Field mustard	cytosol, peroxisome, plastid	86.73	86.73
CDX97378	Canola	cytosol, peroxisome, plastid	86.73	86.73
KRH56096	Soybean	cytosol, peroxisome, plastid	86.73	86.73
EES03750	Sorghum	cytosol, peroxisome, plastid	87.61	86.09
Os05t0498400-02	Rice	cytosol	87.61	86.09
Os01t0794500-00	Rice	cytosol, peroxisome, plastid	87.61	86.09
AT5G54760.3	Thale cress	cytosol, peroxisome, plastid	85.84	85.84
Bra010410.1-P	Field mustard	cytosol, peroxisome, plastid	85.84	85.84
Bra019068.1-P	Field mustard	cytosol, peroxisome, plastid	85.84	85.84
TraesCS3B01G356600.1	Wheat	cytosol, peroxisome, plastid	86.73	85.22
Bra014363.1-P	Field mustard	cytosol, peroxisome, plastid	86.73	85.22
Bra030890.1-P	Field mustard	cytosol, peroxisome, plastid	86.73	85.22
CDY08224	Canola	cytosol, peroxisome, plastid	86.73	85.22
TraesCS3D01G320600.1	Wheat	cytosol, peroxisome, plastid	86.73	85.22
TraesCS3A01G327200.1	Wheat	cytosol, peroxisome, plastid	86.73	85.22
CDY02466	Canola	cytosol, peroxisome, plastid	86.73	84.48
CDY10602	Canola	cytosol, peroxisome, plastid	86.73	84.48
CDY08222	Canola	cytosol, peroxisome, plastid	84.96	83.48
CDY26128	Canola	cytosol, peroxisome, plastid	84.96	83.48
Zm00001d038594_P002	Maize	cytosol, peroxisome, plastid	79.65	76.27
HORVU3Hr1G077960.2	Barley	peroxisome, plastid	79.65	73.17
GSMUA_Achr7P03360_001	Banana	cytosol	43.36	71.01
VIT_19s0177g00100.t01	Wine grape	cytosol, nucleus, peroxisome	90.27	69.39
GSMUA_Achr4P27690_001	Banana	cytosol	95.58	62.79
CDY08751	Canola	cytosol, peroxisome, plastid	52.21	59.6
Zm00001d043217_P002	Maize	cytosol, golgi, peroxisome	78.76	55.97
CDY46663	Canola	plastid	86.73	50.0
CDX92777	Canola	mitochondrion	86.73	48.28
GSMUA_Achr7P00190_001	Banana	cytosol, nucleus, peroxisome, plastid	91.15	46.82
PGSC0003DMT400061864	Potato	cytosol, nucleus, peroxisome	85.84	39.92
Bra012438.1-P	Field mustard	nucleus	53.98	35.47

Protein Annotations

MapMan:17.4.1.1.1	Gene3D:3.30.780.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr9G11860_001	EnsemblPlants:GSMUA_Achr9P11860_001	EnsemblPlants:GSMUA_Achr9T11860_001
InterPro:IPR001950	UniProt:M0TZJ5	PFAM:PF01253	PIRSF:PIRSF004499	PFscan:PS50296	PANTHER:PTHR10388
PANTHER:PTHR10388:SF35	SUPFAM:SSF55159	InterPro:SUI1	InterPro:SUI1_dom_sf	InterPro:SUI1_euk	TIGRFAMs:TIGR01160
UniParc:UPI0002967483	SEG:seg	:	:	:	:

Description

Protein translation factor SUI1 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr9G11860_001]

Coordinates

chr9:-:7682385..7683438

Molecular Weight (calculated)

12642.1 Da

IEP (calculated)

8.733

GRAVY (calculated)

-0.473

Length

113 amino acids

Sequence
(BLAST)

001: MSDLDVHIPT AFDPFADANA EDSGAGAKEY VHIRIQQRNG RKSLTTVQGL KKEFSYNKIL KDLKKEFCCN GTVVQDPELG QVIQLQGDQR KNVSSFLVQA
101: GIIKKEHIKI HGF

Best Arabidopsis Sequence Match ( AT1G54290.1 )
(BLAST)

001: MSDLEVQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

Protein translation factor SUI1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JV4]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.