CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56096	Soybean	cytosol, peroxisome, plastid	97.35	97.35
VIT_12s0059g02370.t01	Wine grape	cytosol	92.04	92.04
KRH25862	Soybean	cytosol	89.38	89.38
KRH55655	Soybean	cytosol	88.5	88.5
GSMUA_Achr1P14620_001	Banana	cytosol, peroxisome, plastid	87.61	87.61
GSMUA_Achr9P11860_001	Banana	cytosol	87.61	87.61
KRH55654	Soybean	cytosol	87.61	87.61
GSMUA_Achr4P24000_001	Banana	cytosol	86.73	86.73
TraesCS3D01G320600.1	Wheat	cytosol, peroxisome, plastid	87.61	86.09
TraesCS3B01G356600.1	Wheat	cytosol, peroxisome, plastid	87.61	86.09
TraesCS3A01G327200.1	Wheat	cytosol, peroxisome, plastid	87.61	86.09
Os01t0794500-00	Rice	cytosol, peroxisome, plastid	87.61	86.09
GSMUA_Achr8P07330_001	Banana	cytosol, peroxisome, plastid	85.84	85.84
EES18447	Sorghum	cytosol	86.73	85.22
EES03750	Sorghum	cytosol, peroxisome, plastid	86.73	85.22
GSMUA_Achr2P14050_001	Banana	cytosol	84.96	84.96
Os05t0498400-02	Rice	cytosol	85.84	84.35
TraesCS1A01G316900.1	Wheat	cytosol	84.96	83.48
TraesCS1B01G329300.1	Wheat	cytosol	84.96	83.48
TraesCS1D01G316900.1	Wheat	cytosol	84.96	83.48
HORVU3Hr1G077960.2	Barley	peroxisome, plastid	82.3	75.61
Zm00001d038594_P002	Maize	cytosol, peroxisome, plastid	76.99	73.73
GSMUA_Achr7P03360_001	Banana	cytosol	41.59	68.12
KRH14395	Soybean	cytosol	60.18	59.65
KRH73751	Soybean	cytosol	58.41	57.89
GSMUA_Achr4P27690_001	Banana	cytosol	87.61	57.56
Zm00001d043217_P002	Maize	cytosol, golgi, peroxisome	77.88	55.35
KRG98759	Soybean	cytosol	61.95	49.65
GSMUA_Achr7P00190_001	Banana	cytosol, nucleus, peroxisome, plastid	84.96	43.64
KRH46184	Soybean	vacuole	59.29	42.68

Protein Annotations

EntrezGene:100784390	MapMan:17.4.1.1.1	Gene3D:3.30.780.10	EMBL:ACUP02007248	EMBL:BT094662	UniProt:C6TAW9
EnsemblPlantsGene:GLYMA_12G100700	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0006412	GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR001950	EnsemblPlants:KRH25407	ProteinID:KRH25407	ProteinID:KRH25407.1
PFAM:PF01253	PIRSF:PIRSF004499	PFscan:PS50296	PANTHER:PTHR10388	PANTHER:PTHR10388:SF35	SUPFAM:SSF55159
InterPro:SUI1	InterPro:SUI1_dom_sf	InterPro:SUI1_euk	TIGRFAMs:TIGR01160	UniParc:UPI0001B163DC	:

Description

hypothetical protein

Coordinates

chr12:-:8831022..8833937

Molecular Weight (calculated)

12674.1 Da

IEP (calculated)

8.712

GRAVY (calculated)

-0.575

Length

113 amino acids

Sequence
(BLAST)

001: MSEFDTNIPT AFDPFAEANA EDSGAGTKEY VHVRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDPELG QVIQLQGDQR KNVSTFLVQA
101: GIVKKEHIKL HGF

Best Arabidopsis Sequence Match ( AT4G27130.1 )
(BLAST)

001: MSELDSQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYTKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

Protein translation factor SUI1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:P41568]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.