CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14395	Soybean	cytosol	57.45	71.05
Solyc07g064620.1.1	Tomato	cytosol	56.03	70.54
KRH73751	Soybean	cytosol	56.03	69.3
VIT_19s0090g00420.t01	Wine grape	cytosol, nucleus, peroxisome	54.61	68.75
CDY43020	Canola	cytoskeleton, cytosol, peroxisome	54.61	68.75
Bra029001.1-P	Field mustard	cytosol	53.9	67.86
AT5G54940.3	Thale cress	cytosol, nucleus, peroxisome	53.19	66.96
KRH25862	Soybean	cytosol	51.06	63.72
KRH55654	Soybean	cytosol	51.06	63.72
KRH55655	Soybean	cytosol	51.06	63.72
KRH25407	Soybean	cytosol, peroxisome, plastid	49.65	61.95
KRH56096	Soybean	cytosol, peroxisome, plastid	48.94	61.06
HORVU4Hr1G010890.1	Barley	cytosol, peroxisome	24.82	59.32
KRH46184	Soybean	vacuole	62.41	56.05
PGSC0003DMT400057195	Potato	cytosol	55.32	54.55
CDY19877	Canola	cytosol	26.24	54.41
Os02t0151501-00	Rice	cytosol, peroxisome	21.99	54.39
PGSC0003DMT400091273	Potato	cytosol	46.81	50.0
CDY52575	Canola	cytosol, peroxisome	54.61	48.73
Zm00001d004854_P001	Maize	extracellular	24.11	47.89
Solyc10g006280.1.1	Tomato	cytosol	41.13	47.15
Bra002944.1-P	Field mustard	cytosol	52.48	31.9
CDY17292	Canola	cytosol	52.48	31.9
Zm00001d007787_P001	Maize	mitochondrion	25.53	28.8

Protein Annotations

EntrezGene:100791423	MapMan:17.4.1.1.1	Gene3D:3.30.780.10	EMBL:ACUP02010919	EnsemblPlantsGene:GLYMA_18G096400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
UniProt:I1N0N9	InterPro:IPR001950	EnsemblPlants:KRG98759	ProteinID:KRG98759	ProteinID:KRG98759.1	PFAM:PF01253
PFscan:PS50296	PANTHER:PTHR10388	PANTHER:PTHR10388:SF36	SUPFAM:SSF55159	InterPro:SUI1	InterPro:SUI1_dom_sf
InterPro:SUI1_euk	UniParc:UPI000233E296	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:9875937..9881522

Molecular Weight (calculated)

16109.5 Da

IEP (calculated)

8.732

GRAVY (calculated)

-0.479

Length

141 amino acids

Sequence
(BLAST)

001: MVDLEIQVPT PFDPFAEARE SDAPGAKEYV HIRIQQRNGK KSLTTVQGLK KEFSYEKILK DLKKEFCCNG TVVQDKELGK IIQLQGDQHV MHGATITSAF
101: EGTWHMVLVS PFPSAPPLLL TWLWKRQQQW RVEHGQLNAK P

Best Arabidopsis Sequence Match ( AT1G54290.1 )
(BLAST)

001: MSDLEVQVPT AFDPFADANA EDSGAGTKEY VHIRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDSELG QVIQLQGDQR KNVSTFLVQA
101: GLVKKDNIKI HGF

Arabidopsis Description

Protein translation factor SUI1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94JV4]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.